Publications
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WT-Ovation Pico
Characterisation of the liver progenitor cell niche in liver diseases: potential involvement of Wnt and Notch signalling
Bart Spee, Tania Roskams; Gut, November 1, 2010.
Members of the Entamoeba histolytica transmembrane kinase family play non-redundant roles in growth and phagocytosis
Sarah N. Buss, William A. Petri Jr.; International Journal for Parasitology, Volume 40, June 2010
The Netherlands Twin Register Biobank: a resource for genetic epidemiological studies
Gonneke Willemsen, Dorret L. Boomsma; Twin Research and Human Genetics, Volume 13, Issue 3, June 2010
Effect of hormone replacement and selective estrogen receptor modulators (SERMs) on the biomechanics and biochemistry of pelvic support ligaments in the
Azin Shahryarinejad MD MPH, Michael D. Vardy MD; American Journal of Obstetrics and Gynecology, Volume 202, Issue 5, May 2010
Circulating osteogenic cells: Characterization and relationship to rates of bone loss in postmenopausal women
Anita Undale, Sundeep Khosla; Journal of Insect Physiology, April 28, 2010
Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells
Matthias Stadtfeld, Konrad Hochedlinger; Nature, April 25, 2010
Preparation of Collagen-Coated Gels that Maximize In Vitro Myogenesis of Stem Cells by Matching the Lateral Elasticity of In Vivo Muscle.
Tathagata Chaudhuri, Dennis E. Discher; Protocols for Adult Stem Cells, April 20, 2010
Deciphering the Mesodermal Potency of Porcine Skin-Derived Progenitors (SKP) by Microarray Analysis
Ming-Tao Zhao, Randall S. Prather; Cellular Reprogramming, April 16, 2010
Gene expression profiling of metaplastic lineages identifies CDH17 as a prognostic marker in early-stage gastric cancer
Hyuk-Joon Lee, James R. Goldenring; Science Direct, AGA Institute, April 13, 2010
Adrenoceptors in Brain: Cellular Gene Expression and Effects on Astrocytic Metabolism and [Ca^2+] i
Leif Hertz, Maiken Nedergaard;Neurochemistry, April 7, 2010
The RNA binding protein HuR differentially regulates unique subsets of mRNAs in estrogen receptor negative and estrogen receptor positive breast cancer
Robert Calaluce, Ulus Atasoy; BMC Cancer, April 6, 2010
Reversine Enhances Generation of Progenitor-Like Cells by Dedifferentiation of Annulus Fibrosus Cells
Mansi Saraiya, Makarand V. Risbud; Tissue Engineering, April 5, 2010
Cell-Specific Gene Expression in Langerhans Cell Histiocytosis Lesions Reveals a Distinct Profile Compared With Epidermal Langerhans Cells
Carl E. Allen, Kenneth L. McClain; The Journal of Immunology, March 10, 2010
Determination of Alternate Splicing Events Using the Affymetrix Exon 1.0 ST Arrays.
Sita Subbaram, Sridar V. Chittur, Microarray Methods for Drug Discovery, March 10, 2010
VTA neurons show a potentially protective transcriptional response to MPTP
Sudarshan Phani, Lorraine Lacovitti, Brain Research, May 10, 2010
Microarray analysis of embryonic stem cells and differentiated embryoid bodies.
Alexander C. Zambon, Christopher S. Barker; Methods in Molecular Biology, March 10, 2010
Fluorescence Activated Cell Sorting of Plant Protoplasts
Bastiaan O.R. Bargmann, Kenneth D. Birnbaum; Journal of Visualized Experiments, February 18, 2010
IDENTIFICATION OF STAGE SPECIFIC GENE MODULATION DURING EARLY THYMOCYTE DEVELOPMENT BY WHOLE GENOME PROFILING ANALYSIS
Michael D. Laiosa, Allen E. Silverstone; Molecular Pharmacology, February 16, 2010.
Elevated Tribbles homolog 2-specific antibody levels in narcolepsy patients
Vesna Cvetkovic-Lopes, Mehdi Tafti; Journal of Clinical Investigation, February 15, 2010
Gene expression profiles of single human mature oocytes in relation to age
M.L. Grondahl, R. Borup; Oxford Journals-Reproduction, February 10, 2010
Diet-induced gene expression of isolated pancreatic islets from a polygenic mouse model of the metabolic syndrome
T. Dreja, H. Al-Hasani, Diabetologia, Volume 53, Number 2, February 2010
Hypothalamic-Specific Manipulation of Fto, the Ortholog of the Human Obesity Gene FTO, Affects Food Intake in Rats
Yi-Chun Loraine Tung, Giles S. H. Yeo; PLoS One, January 19, 2010
Examining Smoking-Induced Differential Gene Expression Changes in Buccal Mucosa
Doris M. Kupfer, Vicky L. White, Dennis Burian; Civil Aerospace Medical Institute, January 2010
AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling
Hubert Rehrauer, Lars Hennig, Plant Physiology, 2010
FOG1 requires NuRD to promote hematopoiesis and maintain lineage fidelity within the megakaryocytic-erythroid compartment.
GD Gregory, GA Blobel; Blood, 2010
Infragranular gene expression disturbances in the prefrontal cortex in schizophrenia: Signature of altered neural development?
Dominique Arion, Karoly Mirnics, Neurobiology of Disease, December 23, 2009
Neonatal Salivary Analysis Reveals Global Developmental Gene Expression Changes in the Premature Infant
Jill L. Maron, Diana W. Bianchi; Clinical Chemistry, December 3, 2009
Age-associated Changes in Cardiac Gene Expression after Preconditioning
Liu Lixin, Mario J. Rebecchi, Anesthesiology, November 2009
Sporadic ALS has compartment-specific aberrant exon splicing and altered cell-matrix adhesion biology
Stuart J. Rabin, John Ravits, Human Molecular Genetics, October 26, 2009
The transcriptional response of the islet to pregnancy in mice
S. Rieck, KH Kaestner, Molecular Endocrinology, October 23, 2009
Unique biomechanical interactions between myeloma cells and bone marrow stroma cells
Yongdong Feng, Chung-Che Chang, Progress in Biophysics and Molecular Biology, October 17, 2009
High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity
Weiyin Zhou, Richard Einstein, BMC Genetics, October 5, 2009
Imprinting of the Polycomb group gene MEDEA serves as a ploidy sensor in Arabidopsis
Alexsandra Erilova, Claudia Kohler, PLoS Genetics, September 25, 2009
Molecular clock is involved in predictive circadian adjustment of renal function
Annie Mercier Zuber, Dmitri Firsov, PNAS, September 9, 2009
Type I interferon signaling in dendritic cells stimulates the development of lymph-node-resident T follicular helper cells
Helena Cucak, Bengt Johansson-Lindbom, Immunity, September 3, 2009
Culture-induced changes in blood�brain barrier transcriptome: implications for amino-acid transporters in vivo
Ruth Lych, Francois Verrey, Journal of Cerebral Blood Flow & Metabolism, September 2009
Biomarkers of Dietary Energy Restriction in Women at Increased Risk of Breast Cancer
Kai Ren Ong, Anthony Howell, Cancer Prevention Research, August 2, 2009
Mucin biosynthesis in the bovine goblet cell induced by Cooperia oncophora infection
Robert W. Li, Louis C. Gasbarre, Veterinary Parasitology, July 15, 2009
Regulation of Adult Hematopoietic Stem Cells Fate for Enhanced Tissue-specific Repair
Nilanjana Sengupta, Maria B. Grant, Molecular Therapy, July 7, 2009
Foxl 2 functions in sex determination and histogenesis throughout mouse ovary development
Jose Elias Garcia-Ortiz, Chris Ottolenghi, BMC Developmental Biology, June 18, 2009
Genome-wide analysis of gene expression in primate taste buds reveals links to diverse processes
Peter Hevezi, Albert Zlotnik, PLoS One, May 27, 2009
Functional genomic analysis of amniotic fluid cell-free mRNA suggests that oxidative stress is significant in Down syndrome fetuses
Donna K. Slonim, Diana W. Bianchi, PNAS, May 27, 2009
Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling
Mathieu Clement-Ziza, Charles Decraene, BMC Genomics, May 26, 2009
Sustained Hypoxia Promotes the Development of a Pulmonary Artery Specific Chronic Inflammatory Microenvironment
Danielle L. Burke, Kurt R. Stenmark, Am J Physiol Lung Cell Mol Physiol, May 22, 2009
IFNalpha activates dormant haematopoietic stem cells in vivo.
Marieke A G Essers, Sandra Offner, William E Blanco-Bose, Zoe Wailber, Ulrich Kalineke, Michel A Duchosal, Andreas Trumpp; Nature, 2009 April 16; 458(7240): 904-8.
Refined anatomical isolation of functional sleep circuits exhibits distinctive regional and circadian gene transcriptional profiles
Christopher J. Winrow, John J. Renger, Brain Research, March 17, 2009
Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device
AmirAli H. Talasaz, Ronald W. Davis, PNAS, March 10, 2009
Extraction and labeling methods for microarrays using small amounts of plant tissue
Alexander J. Stimpson, Rhea S. Pereira, John Z. Kiss, Melanie J. Correll; Physiologia Plantarum, Volume 135, Issue 3, 2009 March, 229-36.
The Dog Liver Contains a ?Side Population� of Cells with Hepatic Progenitor-Like Characteristics
Brigitte Arends, Bart Spee, Stem Cells and Development, March 2009
Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device
AmirAli H. Talasaza, Ashley A. Powell, David E. Huber, James G. Berbe, Kyung-Ho Roh, Wong Yu, Wenzhong Xiao, Mark M. Davis, R. Fabian Pease, Michael N. Mindrinos, Stefanie S. Jeffrey, Ronald W. Davis; Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3970-5. Epub 2009 Feb 20.
IFN&agr; activates dormant haematopoietic stem cells in vivo
Marieke A. G. Essers, Andreas Trumpp, Nature, February 11, 2009
Positive fluorescent selection permits precise, rapid and indepth over-expression analysis in plant protoplasts.
Bastiaan O R. Bargmann and Kenneth D. Birnbaum; Plant Physiology. 2009 Mar;149(3):1231-9. Epub 2009 Jan 23
Positive fluorescent selection permits precise, rapid, and in-depth overexpression analysis in plant protoplasts
Bastiaan O.R. Bargmann, Kenneth D. Birnbaum, Plant Physiology, January 23, 2009
Exonic expression profiling of breast cancer and benign lesions: a retrospective analysis
F. Andre, S. Delaloge, The Lancet Oncology, 2009
Cellular and Molecular Characterization of Ozone-Induced Pulmonary Inflammation in the Cynomolgus Monkey
Alexandra Hicks, Janet Benson, Inflammation, 2009
Moderate kidney disease inhibits atherosclerosis regression
Manish P. Ponda, Edward Y. Skolnik, Atherosclerosis, 2009
Tlymphocytes potentiate endogenous neuroprotective inflammation in a mouse model of ALS.
Isaac M. Chiu, Adam Chen, Yi Zheng, Bela Kosaras, Stefanos A. Tsiftsoglou, Timothy K. Vartanian, Robert H. Brown, Jr., Michael C. Carroll; Proc National Academy Science USA. 2008 Nov 18;105(46):17913-8. Epub 2008 Nov 7.
Gene expression analysis in pregnant women and their infants identifies unique fetal biomarkers that circulate in maternal blood
Isaac M. Chiu, Adam Chen, Yi Zheng, Bela Kosaras, Stefanos A. Tsiftsoglou, Timothy K. Vartanian, Robert H. Brown, Jr., Michael C. Carroll; Proc National Academy Science USA. 2008 Nov 18;105(46):17913-8. Epub 2008 Nov 7.
Osteocalcin expression by circulating endothelial progenitor cells in patients with coronary atherosclerosis.
Mario Gössl, MD, FESC, Ulrike I. Modder, PhD, Elizabeth J. Atkinson, MS, Amir Lerman, MD, FACC, Sundeep Khosla, MD; Journal of American College of Cardiology, Volume 52, Issue 16, Pages 1314-1325, 14 October 2008.
Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system
Chunhong Mao, Clive Evans, Roderick V Jensen and Bruno WS Sobral BMC Microbiology May 2008, 8:72doi:10.1186/1471-2180-8-72
Mechanisms of an autoimmunity syndrome in mice caused by a dominant mutation in Aire.
Maureen A. Su, Karen Giang, Kristina umer, Huimin Jiang, Irena Oven, John L. Rinn, Jason J. DeVoss, Kellsey P.A. Johannes, Wen Lu, James Gardner, Angela Chang, Paula Bubulya, Howard Y. Chang, B. Matija Peterlin, Mark S. Anderson1; Journal of Clinical Investigation, Volume 118, Issue 5, May 1, 2008, 118(5):1712-26.
In vivo endothelial gene regulation in diabetes
J Gregory Maresh and Ralph V Shohet BMC Cardiovascular Diabetology, April 2008, 7:8 doi:10.1186/1475-2840-7-8
Complementary RNA Amplification Methods Enhance Microarray Identification of Transcripts Expressed in the C. elegans Nervous System
Joseph D Watson, Shenglong Wang, Stephen E Von Stetina, W Clay Spencer, Shawn Levy, Phillip J Dexheimer, Nurith Kurn, Joe Don Heath and David M Miller III. February 2008, BMC Genomics, doi:10.1186/1471-2164-9-84
A study of 17 beta-estradiol-regulated genes in the vagina of postmenopausal women with vaginal atrophy
A study of 17 beta-estradiol-regulated genes in the vagina of postmenopausal women with vaginal atrophy Cotreau MM, Chennathukuzhi VM, Zakaria M, Strahs AL, Crabtree JS, Winneker RC, Jelinsky SA., Maturitas. 2007 Dec 20;58(4):366-76. Epub 2007 Nov 9
Homer1a is a core brain molecular correlate of sleep loss
Stephanie Maret, Stephane Dorsaz, Laure Gurce, Sylvain Pradervand, Brice Petit, Corinne Pfiste, Otto Hagenbuchle, Bruce F. O'Hara, Paul Franken, Mehdi Tafti; Proc Natl Acad Scence USA. 2007 Dec 11;104(50):20090-5. Epub 2007 Dec 6.
HOXB4's road map to stem cell expansion
Bernhard Schiedlmeier, Ana Cristina Santos, Ana Ribeiro, Natalia Moncaut, Dietrich Lesinski, Herbert Auer, Karl Kornacker, Wolfram Ostertag, Christopher Baum, Moises Mallo, and Hannes Klump, PNAS, October 23, 2007, vol. 104, no. 43, 16952-16957
Gene Expression Profiles as Markers of Aggressive Disease-EGFR as a Factor
Christine H. Chung, Joel Parker, Shawn Levy, Robbert J. Slebos, Adam P. Dicker, Ulrich Rodeck International Journal of Radiation Oncology * Biology * Physics Volume 69, Issue 2, Supplement, October 2007, Inaugural Multidisciplinary Head and Neck Cancer Symposium
Whole Genome Oligonucleotide-Based Array Comparative Genomic Hybridization Analysis Identified Fibroblast Growth Factor As a Prognostic Marker for Advanced-Stage Serous Ovarian Adenocarcinomas
Michael J. Birrer, Michael E. Johnson, Ke Hao, Kwong-Kwok Wong, William R. Welch, Ross S. Berkowitz, Samuel C. Mok; Journal of Clinical Oncology, Vol. 25, No. 16, June 1, 2007.
Towards the uniform distribution of null P values on Affymetrix microarrays
Anthony A Fodor, Timothy L Tickle and Christine Richardson May 2007, Genome Biology, 8:R69 (doi:10.1186/gb-2007-8-5-r69)
Preliminary Comparison of Quality, Quantity, and Microarray Performance of RNA Extracted from Formalin-Fixed Paraffin-Embedded and Unfixed Frozen Tissue Samples
Marshall S. Scicchitano , Deidre A. Dalmas, Melissa A. Bertiaux, Shawn M. Anderson, Leah R. Turner, Roberta A. Thomas, Rossana Mirable, Rogely W. Boyce. First published JHC exPRESS, July 2006, Journal of Histochemistry and Cytochemistry, doi:10.1369/jhc.6A6999.2006