Publications
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2011
Glycolysis in preimplantation development is partially controlled by the Warburg Effect
Bethany K. Redel, Alana N. Brown, Lee D. Spate, Kristin M. Whitworth, Jonathan A. Green, Randall S. Prather. Molecular Reproduction and Development, April 2012, 79(4):262-271, doi: 10.1002/mrd.22017
Pre-B Cell Leukemia Homeobox 1 Is Associated with Lupus Susceptibility in Mice and Humans
Carla M. Cuda, Shiwu Li, Shujuan Liang, Yiming Yin, Hari Hara S. K. Potula, Zhiwei Xu, Mayami Sengupta, Yifang Chen, Edward Butfiloski, Henry Baker, Lung-Ji Chang, Igor Dozmorov, Eric S. Sobel and Laurence Morel. The Journal of Immunology, January 15, 2012, 188(2): 604-614, doi:10.4049/ jimmunol.1002362
Whole genome RNA expression profiling of endoscopic biliary brushings provides data suitable for biomarker discovery in cholangiocarcinoma
Chapman MH, Tidswell R, Dooley JS, Sandanayake NS, Cerec V, Deheragoda M, Lee AJ, Swanton C, Andreola F, Pereira SP. J Hepatol. 2012 Apr;56(4):877-85. Published online 14 December 2011.
Functional heterogeneity of human effector CD8 T cells
Takata H, Naruto T, Takiguchi M. Blood. 2012 Feb 9; 119(6):1390-8. Epub 2011 Dec 14. PMID: 22174157
Rational Design of Therapeutic siRNAs: Minimizing Off-targeting Potential to Improve the Safety of RNAi Therapy for Huntington's Disease
Ryan L Boudreau, Ryan M Spengler and Beverly L Davidson. Molecular Therapy 19, 2169-2177 (December 2011) | doi:10.1038 mt.2011.185
ETV6 mutations in early immature human T cell leukemias
Pieter Van Vlierberghe, Alberto Ambesi-Impiombato, Arianne Perez-Garcia, J. Erika Haydu, Isaura Rigo, Michael Hadler, Valeria Tosello, Giusy Della Gatta, Elisabeth Paietta, Janis Racevskis, Peter H. Wiernik, Selina M. Luger, Jacob M. Rowe, Montserrat Rue and Adolfo A. Ferrando. Journal of Experimental Science, 2011, doi: 10.1084/jem.20112239
Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes
Timothy A Graubert, Dong Shen, Li Ding, Theresa Okeyo-Owuor, Cara L Lunn, Jin Shao, Kilannin Krysiak, Christopher C Harris, Daniel C Koboldt, David E Larson, Michael D McLellan, David J Dooling, Rachel M Abbott, Robert S Fulton, Heather Schmidt, Joelle Kalicki-Veizer, Michelle O'Laughlin, Marcus Grillot, Jack Baty, Sharon Heath, John L Frater, Talat Nasim, Daniel C Link, Michael H Tomasson, Peter Westervelt, et al. Nature Genetics, 2012, 44:53-57; doi:10.1038/ng.1031
Osteogenic effects of a potent Src-over-Abl-selective kinase inhibitor in the mouse
Murrills RJ, Fukayama S, Boschelli F, Matteo JJ, Owens J, Golas JM, Patel D, Lane G, Liu YB, Carter L, Jussif J, Spaulding V, Wang YD,Boschelli DH, McKew JC, Li XJ, Lockhead S, Milligan C, Kharode YP, Diesl V, Bai Y, Follettie M, Bex FJ, Komm B, Bodine PV. Journal of Pharmacology Experimental Therapeutics. 2012 Mar; 340(3):676-87. Epub 2011 Dec 9. PMID: 22171089
Molecular signatures of peripheral blood mononuclear cells during chronic interferon-a treatment: relationship with depression and fatigue
Felger JC, Cole SW, Pace TW, Hu F, Woolwine BJ, Doho GH, Raison CL, Miller AH. Psychological Medicine. 2011 Dec 9:1-13; PMID: 22152193
Epigenetic Mechanisms of Groucho/Grg/TLE Mediated Transcriptional Repression
Sanjeevkumar R. Patel, Samina S. Bhumbra, Raghavendra S. Paknikar, Gregory R. Dressler. Molecular Cell, 2011, 45(2): 185-195, doi: 10.1016/j.molcel.2011.11.007
Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock
Walter L. Eckalbar, Eris Lasku, Carlos R. Infante, Ruth M. Elsey, Glenn J. Markov, April N. Allen, Jason J. Corneveaux, Jonathan B. Losos, Dale F. DeNardo, Matthew J. Huentelman, Jeanne Wilson-Rawls, Alan Rawls, Kenro Kusumi. Developmental Biology, 2012, 363(1): 308-319, http://dx.doi.org/10.1016/j.ydbio.2011.11.021
Adiponectin Attenuates Lipopolysaccharide-Induced Acute Lung Injury through Suppression of Endothelial Cell Activation
Jason M. Konter, Jennifer L. Parker, Elizabeth Baez, Stephanie Z. Li, Barbara Ranscht, Martin Denzel, Frederic F. Little, Kazuto Nakamura, Noriyuki Ouchi, Alan Fine, Kenneth Walsh and Ross S. Summer. The Journal of Immunology, January 15, 2012, 188(2): 854-863. doi:10.4049/jimmunol.1100426
139 TRANSCRIPTOME ANALYSIS OF SINGLE BOVINE EMBRYOS BY RNA-Seq
Ross, P. J., and Chitwood, J. L. (2011). Reprod. Fertil. Dev. 2011. 24, 182-182.
Genomic aberrations in normal appearing mucosa fields distal from oral potentially malignant lesions
Giaretti W, Maffei M, Pentenero M, Scaruffi P, Donadini A, Di Nallo E, Malacarne D, Marino R, Familiari U, Coco S, Tonini GP, Castagnola P,Gandolfo S. Cell Oncology. 2012 Feb; 35(1):43-52. doi: 10.1007/s13402-011-0064-2. Epub 2011 Dec 6. PMID: 22144094, PMCID: PMC3268978
Progression of ductal carcinoma in situ to invasive breast cancer is associated with gene expression programs of EMT and myoepithelia
Erik S. Knudsen, Adam Ertel, Elai Davicioni, Jessica Kline, Gordon F. Schwartz and Agnieszka K. Witkiewicz. Breast Cancer Research and Treatment 2011. doi: 10.1007/s10549-011-1894-3. PMID: 22134623
Neuroglobin-Deficiency Exacerbates Hif1A and c-FOS Response, but Does Not Affect Neuronal Survival during Severe Hypoxia In Vivo
Hundahl CA, Luuk H, Ilmjarv S, Falktoft B, Raida Z, et al. PLoS ONE, 2011, 6(12): e28160. doi:10.1371/journal.pone.0028160
Muscle weakness in myotonic dystrophy associated with misregulated splicing and altered gating of CaV1. 1 calcium channel
Zhen Zhi Tang, Viktor Yarotskyy, Lan Wei, Krzysztof Sobczak, Masayuki Nakamori, Katy Eichinger, Richard T. Moxley, Robert T. Dirksen and Charles A. Thornton. Human Molecular Genetics, 2011, doi: 10.1093/hmg/ddr568
Genetics of Sputum Gene Expression in Chronic Obstructive Pulmonary Disease
Qiu W, Cho MH, Riley JH, Anderson WH, Singh D, et al. 2011 PLoS ONE 6(9): e24395. doi:10.1371/journal.pone.0024395
Microfluidics-based capture of human neutrophils for expression analysis in blood and bronchoalveolar lavage
Akinori Muto, Toshihide Mizoguchi, Nobuyuki Udagawa, Susumu Ito, Ichiro Kawahara, Yoshimitsu Abiko, Atsushi Arai, Suguru Harada, Yasuhiro Kobayashi, Yuko Nakamichi, Josef M Penninger, Toshihide Noguchi, Naoyuki Takahashi PhD, Article first published online: 21 NOV 2011DOI: 10.1002/jbmr.490
Optimized amplification and single-cell analysis identify GnRH-mediated activation of Rap1b in primary rat gonadotropes
Tony Yuen, Soon Gang Choi, Hanna Pincas, Dennis W. Waring, Stuart C. Sealfon, Judith L. Turgeon. Molecular and Cellular Endocrinology, 5 March 2012, 350(1):10-19, http://dx.doi.org/10.1016/j.mce.2011.11.017
Arbuscule-containing and non-colonized cortical cells of mycorrhizal roots undergo extensive and specific reprogramming during arbuscular mycorrhizal development
Gaude, N., Bortfeld, S., Duensing, N., Lohse, M. and Krajinski, F. The Plant Journal, 2012, 69: 510-528, doi: 10.1111/j.1365-313X.2011.04810.x
Lineage-committed osteoclast precursors circulate in blood and settle down into bone
Akinori Muto, Toshihide Mizoguchi, Nobuyuki Udagawa, Susumu Ito, Ichiro Kawahara, Yoshimitsu Abiko, Atsushi Arai, Suguru Harada, Yasuhiro Kobayashi, Yuko Nakamichi, Josef M Penninger, Toshihide Noguchi, Naoyuki Takahashi PhD, Article first published online: 21 NOV 2011DOI: 10.1002/jbmr.490
Organelle-nucleus cross-talk regulates plant intercellular communication via plasmodesmata
Tessa M. Burch-Smith, Jacob O. Brunkard, Yoon Gi Choi, and Patricia C. Zambryski. PNAS, December 20, 2011, 108(51): E1451-E1460, doi:10.1073/pnas.1117226108
Molecular signature and pathway analysis of human primary squamous and adenocarcinoma lung cancers
Daraselia N, Wang Y, Budoff A, Lituev A, Potapova O, Vansant G, Monforte J, Mazo I, Ossovskaya VS. American Journal of Cancer Research. 2012; 2(1):93-103. Epub 2011 Nov 19. PMID: 22206048, PMCID: PMC3238469
Mammary Gland Morphological and Gene Expression Changes Underlying Pregnancy Protection of Breast Cancer Tumorigenesis
Yogi Misra, Pamela A. Bentley, Jeffrey P. Bond, Scott Tighe, Timothy Hunter, and Feng-Qi Zhao. Physiol. Genomics, January 1, 2012 vol. 44 no. 1 76-88. doi:10.1152/physiolgenomics.00056.2011. Published online before print November 15, 2011
Human MAIT and CD8aa cells develop from a pool of type-17 pre-committed CD8+ T cells
Lucy J. Walker, Yu-Hoi Kang, Matthew O. Smith, Hannah Tharmalingham, Narayan Ramamurthy, Vicki M. Fleming, Natasha Sahgal, Alistair Leslie, Ye Oo, Alessandra Geremia, Thomas J. Scriba, Willem A. Hanekom, Georg M. Lauer, Olivier Lantz, David H. Adams, Fiona Powrie, Eleanor Barnes and Paul Klenerman. Blood, January 12, 2012, 119(2): 422-433; doi:10.1182/blood-2011-05-353789
Perivascular Human Endometrial Mesenchymal Stem Cells Express Pathways Relevant to Self-Renewal, Lineage Specification, and Functional Phenotype
Trimble L.B. Spitzer, Angela Rojas, Zara Zelenko, Lusine Aghajanova, David W. Erikson, Fatima Barragan, Michelle Meyer, John S. Tamaresis, Amy E. Hamilton, Juan C. Irwin and Linda C. Giudice. Biology of Reproduction, Feb 2012, vol. 86 no. 2 58; doi: 10.1095/ biolreprod.111.095885
FOG-1 and GATA-1 act sequentially to specify definitive megakaryocytic and erythroid progenitors
Mancini E, Sanjuan-Pla A, Luciani L, Moore S, Grover A, Zay A, Rasmussen KD, Luc S, Bilbao D, O'Carroll D, Jacobsen SE, Nerlov C. EMBO Journal. 2011 Nov 8; 31(2):351-65. doi: 10.1038/emboj.2011.390. PMID:22068055, PMCID: PMC3261555
Development and independent validation of a prognostic assay for stage II colon cancer using formalin-fixed paraffin-embedded tissue
Richard D. Kennedy, Max Bylesjo, Peter Kerr, Timothy Davison, Julie M. Black, Elaine W. Kay, Robert J. Holt, Vitali Proutski,Miika Ahdesmaki, Vadim Farztdinov, Nicolas Goffard, Peter Hey, Fionnuala McDyer, Karl Mulligan, Julie Mussen, Eamonn O'Brien, Gavin Oliver, Steven M. Walker, Jude M. Mulligan, Claire Wilson, Andreas Winter, Diarmuid O'Donoghue, Hugh Mulcahy, Jacintha O'Sullivan, Kieran Sheahan, John Hyland, Rajiv Dhir, Oliver F. Bathe, Ola Winqvist, Upender Manne, Chandrakumar Shanmugam, Sridhar Ramaswamy, Eduardo J. Leon, William I. Smith Jr, Ultan McDermott, Richard H. Wilson, Daniel Longley, John Marshall, Robert Cummins, Daniel J. Sargent, Patrick G. Johnston and D. Paul Harkin. Journal of Clinical Oncology 2011.35.4498. doi:10.1200/JCO.2011.35.4498JCO. Published online: November 7, 2011
Sustained axon regeneration induced by co-deletion of PTEN and SOCS3
Fang Sun, Kevin K. Park, Stephane Belin, Dongqing Wang, Tao Lu, Gang Chen, Kang Zhang, Cecil Yeung, Guoping Feng, Bruce A. Yankner & Zhigang He. Nature 480, 372-375; 15 December 2011. doi:10.1038/nature10594
Trichome isolation with and without fixation using laser microdissection and pressure catapulting followed by RNA amplification: Expression of genes of terpene metabolism in apical and sub-apical trichome cells of Artemisia annua L.
Linda Olofsson, Anneli Lundgren, Peter E. Brodelius. Plant Science, 2012 February; 183: 9-13.
Unique Type I Interferon Responses Determine the Functional Fate of Migratory Lung Dendritic Cells during Influenza Virus Infection
Moltedo B, Li W, Yount JS, Moran TM. PLoS Pathology, 2011, 7(11): e1002345. doi:10.1371/journal.ppat.1002345
Clearance of p16Ink4a-positive senescent cells delays ageing-associated disorders
Darren J. Baker, Tobias Wijshake, Tamar Tchkonia, Nathan K. LeBrasseur, Bennett G. Childs, Bart van de Sluis, James L. Kirkland & Jan M. van Deursen. Nature, November 2011; 479, 232-236. doi:10.1038/nature10600
Gene Expression Analysis of Whole Blood, Peripheral Blood Mononuclear Cells, and Lymphoblastoid Cell Lines from the Framingham Heart Study
Roby Joehanes, Andrew Danner Johnson, Jennifer Joanna Barb, Nalini Raghavachari, Poching Liu, Kimberly Ann Woodhouse, Christopher Joseph O'Donnell, Peter J. Munson, and Daniel Levy. Physiological Genomics, November 1, 2011. doi: 10. 1152/ physiolgenomics. 00130. 2011
Ossifying Fibromyxoid Tumor of Soft Parts: A Clinicopathologic, Proteomic, and Genomic Study
Graham RP, Dry S, Li X, Binder S, Bahrami A, Raimondi SC, Dogan A, Chakraborty S, Souchek JJ, Folpe AL. The American Journal of Surgical Pathology, 2011 Nov;35(11):1615-25. PMID:21997683; PMCID: PMC3193600
Roles of Beta-catenin signaling in phenotypic expression and proliferation of articular cartilage superficial zone cells
Yasuhara R, Ohta Y, Yuasa T, Kondo N, Hoang T, Addya S, Fortina P, Pacifici M, Iwamoto M, Enomoto-Iwamoto M. Laboratory Investigation. 2011 Dec;91(12):1739-52. doi: 10.1038/labinvest.2011.144. Epub 2011 Oct 3. PMID: 21968810
Distal Airway Stem Cells Yield Alveoli In Vitro and during Lung Regeneration following H1N1 Influenza Infection
Pooja A. Kumar, Yuanyu Hu, Yusuke Yamamoto, Neo Boon Hoe, Tay Seok Wei, Dakai Mu, Yan Sun, Lim Siew Joo, Rania Dagher, Elisabeth M. Zielonka, De Yun Wang, Bing Lim, Vincent T. Chow, Christopher P. Crum, Wa Xian, Frank McKeon. Cell, 28 October 2011, 147(3): 525-538, doi:10.1016/j.cell.2011.10.001
Investigation of Variation in Gene Expression Profiling of Human Blood by Extended Principle Component Analysis
Xu Q, Ni S, Wu F, Liu F, Ye X, et al. PLoS ONE 6(10): e26905. 2011. doi:10.1371/journal.pone.0026905
A Transcriptional Program Promotes Remodeling of GABAergic Synapses in Caenorhabditis elegans
Sarah C. Petersen, Joseph D. Watson, Janet E. Richmond, Mihail Sarov, Walter W. Walthall, and David M. Miller III. The Journal of Neuroscience, October 2011, 31(43): 15362-15375, doi:10.1523/JNEUROSCI.3181-11.2011
Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation
Shannon E. Mullican, Christine A. Gaddis, Theresa Alenghat, Meera G. Nair, Paul R. Giacomin, Logan J. Everett, Dan Feng, David J. Steger, Jonathan Schug, David Artis and Mitchell A. Lazar. Genes & Development, 2011, 25:2480-2488; doi:10.1101/gad.175950.111
AML1/RUNX1 functions as a cytoplasmic attenuator of NF-kB signaling in the signaling in the repression of myeloid tumors
Masahiro Nakagawa, Munetake Shimabe, Naoko Watanabe-Okochi, Shunya Arai, Akihide Yoshimi, Akihito Shinohara, Nahoko Nishimoto, Keisuke Kataoka, Tomohiko Sato, Keiki Kumano, Yasuhito Nannya, Motoshi Ichikawa, Yoichi Imai, and Mineo Kurokawa. Blood, December 15, 2011 vol. 118 no. 256626-6637. doi: 10.1182/blood-2010-12-326710. Published online: October 21, 2011
Transcriptomic analyses of murine resolution-phase macrophages.
Melanie J. Stables, Sonia Shah, Evelyn B. Camon, Ruth C. Lovering, Justine Newson, Jonas Bystrom, Stuart Farrow, and Derek W. Gilroy. Blood, October 19, 2011; doi: 10.1182/blood-2011-04-345330. Published online: October 19, 2011
Involvement of Endoplasmic Reticulum Stress in Inflammatory Bowel Disease: A Different Implication for Colonic and Ileal Disease?
Bogaert S, De Vos M, Olievier K, Peeters H, Elewaut D, et al. PLoS ONE, 2011, 6(10): e25589. doi:10.1371/journal.pone.0025589
Inhibition of RPE cell sterile inflammatory responses and endotoxin-induced uveitis by a cell-impermeable HSP90 inhibitor
Qin S, Ni M, Wang X, Maurier-Mahe F, Shurland DL, Rodrigues GA. Experimental Eye Research. 2011 Dec; 93(6):889-97. Epub 2011 Oct 18. PMID: 22019372
Importance of Correlation between Gene Expression Levels: Application to the Type I Interferon Signature in Rheumatoid Arthritis
Reynier F, Petit F, Paye M, Turrel-Davin F, Imbert PE, Hot A, Mougin B, Miossec P. PLoS One. 2011;6(10):e24828. Epub 2011 Oct 17. PMID: 22043277; PMCID: PMC3197194
The transcriptional coactivator Cbp regulates self-renewal and differentiation in adult hematopoietic stem cells
Wai-In Chan, Rebecca L. Hannah, Mark A. Dawson, Clare Pridans, Donna Foster, Anagha Joshi, Berthold Gottgens, Jan M. Van Deursen and Brian J.P. Huntly. Molecular and Cellular Biology, 2011, doi:10.1128/MCB.05830-11
Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis
Kasper Thorsen, Troels Schepeler, Bodil Oster, Mads H Rasmussen, Soren Vang, Kai Wang, Kristian Q Hansen, Philippe Lamy, Jakob S Pedersen, Asger Eller, Francisco Mansilla, Kirsti Laurila, Carsten Wiuf, Soren Laurberg, Lars Dyrskjot,Torben F Orntoft and Claus L Andersen. BMC Genomics 2011,12:505, doi:10.1186/1471-2164-12-505
RNA-Seq for Plant Pathogenic Bacteria
Jeffrey A. Kimbrel, Yanming Di, Jason S. Cumbie and Jeff H. Chang. Genes 2011, 2(4), 689-705; doi:10.3390/genes2040689
Transient ischemic attacks characterized by RNA profiles in blood
Zhan X, Jickling GC, Tian Y, Stamova B, Xu H, Ander BP, Turner RJ, Mesias M, Verro P, Bushnell C, Johnston SC, Sharp FR. Neurology. 2011 Nov 8; 77(19):1718-24. Epub 2011 Oct 12. PMID: 21998319
Peritoneal macrophages are distinct from monocytes and adherent macrophages
Krithika Selvarajan, Leni Moldovan, Aluganti Narasimhulu Chandrakala, Dmitry Litvinov, Sampath Parthasarathy. Atherosclerosis. 2011 Dec; 219(2):475-83. doi:10.1016/j.atherosclerosis.2011.09.014
Cell type-specific transcriptome analysis reveals a major role for Zeb1 and miR-200b in mouse inner ear morphogenesis
Hertzano R, Elkon R, Kurima K, Morrisson A, Chan SL, Sallin M, Biedlingmaier A, Darling DS, Griffith AJ, Eisenman DJ, Strome SE. PLoS Genet. 2011 Sep;7(9):e1002309.
Splice variants of tissue factor promote monocyte endothelial interactions by triggering the expression of cell adhesion molecules via integrin mediated signaling
R. SRINIVASAN, E. OZHEGOV, Y. W. VAN DEN BERG, B. J. ARONOW, R. S. FRANCO, M. B. PALASCAK, J. T. FALLON, W. RUF, H.H. VERSTEEG, V.Y. BOGDANOV Article first published online: 29 SEP 2011 DOI: 10.1111/j.1538-7836.2011.04454.x
Cell Type-Specific Transcriptome Analysis Reveals a Major Role for Zeb1 and miR-200b in Mouse Inner Ear Morphogenesis
Hertzano R, Elkon R, Kurima K, Morrisson A, Chan S-L, et al. PLoS Genet 7(9): e1002309. 2011. doi:10.1371/journal.pgen.1002309
Activation of Postnatal Neural Stem Cells Requires Nuclear Receptor TLX
Niu W, Zou Y, Shen C, Zhang CL, J Neurosci, 2011, Sep 28;31(39)
Transcriptional responses to loss or gain of function of the leucine-rich repeat kinase 2 (LRRK2) gene uncover biological processes modulated by LRRK2 activity
Elena V. Nikonova, Yulan Xiong, , Keith Q. Tanis, Valina L. Dawson, Robert L. Vogel, Eva M. Finney, David J. Stone, Ian J. Reynolds, Jonathan T. Kern and Ted M. Dawson. Human Molecular Genetics, 2011. doi: 10.1093/hmg/ddr451. First published online: October 4, 2011
Cardiomyocyte-Specific Deletion of the Vitamin D Receptor Gene Results in Cardiac Hypertrophy Clinical Perspective
Songcang Chen, Christopher S. Law, Christopher L. Grigsby, Keith Olsen, Ting-Ting Hong, MD, Yan Zhang, MD, Yerem Yeghiazarians, David G. Gardner. Circultation, 2011, doi: 10.1161/CIRCULATIONAHA.111.032680
CD140a identifies a population of highly myelinogenic, migration-competent and efficiently engrafting human oligodendrocyte progenitor cells
Fraser J Sim, Crystal R McClain, Steven J Schanz, Tricia L Protack, Martha S Windrem & Steven A Goldman Nature Biotechnology Volume: 29, 934-941 (2011) doi:10.1038/nbt.1972. Published online September 25, 2011
Potential candidate genomic biomarkers of drug induced vascular injury in the rat
Deidre A. Dalmas, Marshall S. Scicchitano, David Mullins, Angela Hughes-Earle, Kay Tatsuoka, Michal Magid-Slav, Kendall S. Frazier, Heath C. Thomas. Toxicology and Applied Pharmacology, Dec 2011, 257(2): 284-300, http://dx.doi.org/10.1016/j.taap.2011.09.015
Genes and pathways affected by CAG-repeat RNA-based toxicity in Drosophila
Shin-Yi Shieh, Nancy M Bonini; Hum. Mol. Genet. (2011) doi: 10.1093/hmg/ddr420; First published online: September 20, 2011
Differential Granulosa cell Gene Expression in Young Women with Diminished Ovarian Reserve
Greenseid K, Jindal S, Hurwitz J, Santoro N, Pal L. Reprod Sci. 2011 Sep;18(9):892-9.
The identification of gene expression profiles associated with progression of human diabetic neuropathy
Junguk Hur, Kelli A. Sullivan, Manjusha Pande, Yu Hong, Anders A. F. Sima, Hosagrahar V. Jagadish, Matthias Kretzler, and Eva L. Feldman. Brain (2011) doi: 10.1093/brain/awr228 First published online: September 16, 2011
Distinct Populations of Hepatic Stellate Cells in the Mouse Liver Have Different Capacities for Retinoid and Lipid Storage
D'Ambrosio DN, Walewski JL, Clugston RD, Berk PD, Rippe RA, et al. 2011 . PLoS ONE 6(9): e24993. doi:10.1371/journal.pone.0024993. Published September 16, 2011
Gene Signatures Derived from a c-MET-Driven Liver Cancer Mouse Model Predict Survival of Patients with Hepatocellular Carcinoma
Ivanovska I, Zhang C, Liu AM, Wong KF, Lee NP, et al. (2011) Gene Signatures Derived from a c-MET-Driven Liver Cancer Mouse Model Predict Survival of Patients with Hepatocellular Carcinoma. PLoS ONE 6(9): e24582. doi:10.1371/journal.pone.0024582. Published September 16, 2011.
Molecular profiling and gene expression analysis in cutaneous sarcoidosis: The role of interleukin-12, interleukin-23, and the T-helper 17 pathway
Marc A. Judson, Richard M. Marchell, MaryAnn Mascelli, Alexa Piantone, Elliot S. Barnathan, Kevin J. Petty, Dion Chen, Hongtao Fan, Heidi Grund, Keying Ma, Frederic Baribaud, Carrie Brodmerkel, Journal of the American Academy of Dermatology, Available online 15 September 2011, ISSN 0190-9622, 10.1016/j.jaad.2011.06.017.
Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment
Emily Hodges, Antoine Molaro, Camila O. Dos Santos, Pramod Thekkat, Qiang Song, Philip J. Uren, Jin Park, Jason Butler, Shahin Rafii, W. Richard McCombie, Andrew D. Smith, Gregory J. Hannon. Molecular Cell - 7 October 2011. Vol. 44, Issue 1, pp. 17-28
An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming
Mathieu Gabut, Payman Samavarchi-Tehrani, Xinchen Wang, Valentina Slobodeniuc, Dave O'Hanlon, Hoon-Ki Sung, Manuel Alvarez, Shaheynoor Talukder, Qun Pan, Esteban O. Mazzoni, Stephane Nedelec, Hynek Wichterle, Knut Woltjen, Timothy R. Hughes, Peter W. Zandstra, Andras Nagy, Jeffrey L. Wrana, Benjamin J. Blencowe. Cell. 15 September 2011, Vol. 147, Issue 1, pp. 132-146. doi: 10.1016/j.cell.2011.08.023
Transdifferentiation from cornea to lens in Xenopus laevis depends on BMP signalling and involves upregulation of Wnt signalling
Robert C Day, Caroline W Beck; BMC Developmental Biology 2011, 11:54 doi:10.1186/1471-213X-11-54
Crx broadly modulates the pineal transcriptome
Louise Rovsing, Samuel Clokie, Diego M. Bustos, Kristian Rohde, Steven L. Coon, Thomas Litman, Martin F. Rath, Morten Moller, David C. Klein Journal of Neurochemistry Volume 119, Issue 2, pages 262-274, October 2011. Article first published online: Sept 2, 2011
Significant Effects of Antiretroviral Therapy on Global Gene Expression in Brain Tissues of Patients with HIV-1-Associated Neurocognitive Disorders
Borjabad A, Morgello S, Chao W, Kim S-Y, Brooks AI, et al. 2011 PLoS Pathog 7(9): e1002213. doi:10.1371/journal.ppat.1002213
Regulation of Gene Expression in Ovarian Cancer Cells by Luteinizing Hormone Receptor Expression and Activation
Juan Cui, Brooke M Miner, Joanna B Eldredge, Susanne W Warrenfeltz, Phuongan Dam, Ying Xu. Cui et al. BMC Cancer 2011, 11:280
Overexpression of Cloned RhsA Sequences Perturbs the Cellular Translational Machinery in Escherichia coli
Aggarwal K, Lee KH. J Bacteriol. 2011 Sep; 193(18):4869-80. Epub 2011 Jul 15. PubMed PMID: 21764923; PubMed Central PMCID: PMC3165670.
The PTPN22 allele encoding an R620W variant interferes with the removal of developing autoreactive B cells in humans
Laurence Menard, David Saadoun, Isabelle Isnardi, Yen-Shing Ng, Greta Meyers, Christopher Massad, Christina Price, Clara Abraham, Roja Motaghedi, Jane H. Buckner, Peter K. Gregersen, Eric Meffre. J Clin Invest. 2011; 121(9):3635 doi:10.1172/JCI45790
Inactivation of a Single Copy of Crebbp Selectively Alters Pre-mRNA Processing in Mouse Hematopoietic Stem Cells
Lemieux ME, Cheng Z, Zhou Q, White R, Cornell J, et al. PLoS ONE 6(8): e24153. 2011. doi:10.1371/journal.pone.0024153
Genome-based analysis of the nonhuman primate Macaca fascicularis as a model for drug safety assessment
Martin Ebeling, Erich Kung, Angela See, Clemens Broger, Guido Steiner, Marco Berrera, Tobias Heckel, Leonardo Iniguez, Thomas Albert, Roland Schmucki, Hermann Biller, Thomas Singer and Ulrich Certa. Genome Research, 2011, 21:1746-1756; doi:10.1101/gr.123117.111
Gene Expression Differences in Oocytes Derived From Adult and Prepubertal Japanese Black Cattle during In Vitro Maturation
Dorji , Y Ohkubo, K Miyoshi, M Yoshida Article first published online: 22 AUG 2011 DOI: 10.1111/j.1439-0531.2011.01887.x
Gene Expression Analysis of the Embryonic Subplate
Franziska M. Oeschger, Wei-Zhi Wang, Sheena Lee, Fernando Garcia-Moreno, Andre M. Goffinet, Maria L. Arbones, Sonja Rakic and Zoltan Molnar, Cereb. Cortex (2011) doi: 10.1093/cercor/bhr197, August 22, 2011
Transcriptomic Analysis of Mouse Embryonic Skin Cells Reveals Previously Unreported Genes Expressed in Melanoblasts
Colombo S, Champeval D, Rambow F, Larue L. J Invest Dermatol. 2012 Jan;132(1):170-8. doi: 10.1038 jid.2011.252. Epub 2011 Aug 18.
The Potorous CPD Photolyase Rescues a Cryptochrome-Deficient Mammalian Circadian Clock
Chaves I, Nijman RM, Biernat MA, Bajek MI, Brand K, et al. PLoS ONE 6(8): e23447. 2011. doi:10.1371/journal.pone.0023447
Genome-wide gene expression profiling of nucleus accumbens neurons projecting to ventral pallidum using both microarray and transcriptome sequencing
Chen H, Liu Z, Gong S, Wu X, Taylor WL, Williams RW, Matta SG and Sharp BM (2011). Front. Neurosci. 5:98. doi: 10.3389/fnins.2011.00098
Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds
Peter C McKeown, Sylvia Laouielle-Duprat, Pjotr Prins, Philip Wolff, Marc W Schmid, Mark TA Donoghue, Antoine Fort, Dorota Duszynska, Aurelie Comte, Nga T Lao, Trevor J Wennblom, Geert Smant, Claudia Kohler, Ueli Grossniklaus and Charles Spillane BMC Plant Biology 2011, 11:113 doi:10.1186/1471-2229-11-113
Follicular lymphoma tumor-infiltrating T-helper (TH) cells have the same polyfunctional potential as normal nodal TH cells despite skewed differentiation
Hilchey SP, Rosenberg AF, Hyrien O, Secor-Socha S, Cochran MR, Brady MT, Wang JC, Sanz I, Burack WR, Quataert SA, Bernstein SH. Blood. 2011 Sep 29;118(13):3591-602.
Directed Conversion of Alzheimer's Disease Patient Skin Fibroblasts into Functional Neurons
Liang Qiang, Ryousuke Fujita, Toru Yamashita, Sergio Angulo, Herve Rhinn, David Rhee, Claudia Doege, Lily Chau, Laetitia Aubry, William B. Vanti, Herman Moreno, Asa Abeliovich. Cell. 5 August 2011, Vol. 146, Issue 3, pp. 359-371. doi: 10.1016/j.cell.2011.07.007
Single cell transcriptomics of neighboring hyphae of Aspergillus niger
Charissa de Bekker, Oskar Bruning, Martijs J Jonker, Timo M Breit and Han AB Wosten. Genome Biology 2011, 12:R71 doi:10.1186/gb-2011-12-8-r71 Published: 4 August 2011
Validation of Endogenous Control Genes for Gene Expression Studies on Human Ocular Surface Epithelium
Bina Kulkarni, Imran Mohammed, Andrew Hopkinson, Harminder Singh Dua
Gene expression in accumbens GABA neurons from inbred rats with different drug-taking behavior
B. M. Sharp, H. Chen, S. Gong, X. Wu, Z. Liu, K. Hiler, W. L. Taylor, S. G. Matta. Genes, Brain and Behavior, October 2011. 10(7): 778-788. doi: 10.1111/j.1601-183X.2011.00716.x. First published online: 1 August 2011.
Transcriptome Analysis of Epithelial and Stromal Contributions to Mammogenesis in Three Week Prepartum Cows
Casey T, Dover H, Liesman J, DeVries L, Kiupel M, et al. PLoS ONE 6(7): e22541. 2011. doi:10.1371/journal.pone.0022541
Profiles of lacunar and nonlacunar stroke
Jickling GC, Stamova B, Ander BP, Zhan X, Tian Y, Liu D, Xu H, Johnston SC, Verro P, Sharp FR. Annals of Neurology. 2011 Sep; 70(3):477-85. doi: 10.1002/ana.22497. Epub 2011 Jul 27. PMID: 21796664, PMCID: PMC3201749
Optimal Techniques for mRNA Extraction from Neonatal Salivary Supernatant
Dietz JA, Johnson KL, Wick HC, Bianchi DW, Maron JL. Neonatology 2012;101(1)55-60. doi:10.1159/000328026
Genome-wide gene expression profiling of nucleus accumbens neurons projecting to ventral pallidum using both microarray and transcriptome sequencing
Hao Chen, Zhimin Liu, Suzhen Gong, Xingjun Wu, William L. Taylor, Robert W. Williams, Shannon G. Matta and Burt M. Sharp
Foxp3+ follicular regulatory T cells control the germinal center response
Michelle A Linterman, Wim Pierson, Sau K Lee, Axel Kallies, Shimpei Kawamoto, Tim F Rayner, Monika Srivastava, Devina P Divekar, Laura Beaton, Jennifer J Hogan, Sidonia Fagarasan, Adrian Liston, Kenneth G C Smith & Carola G Vinuesa. Nature Medicine, 17:975-982, 2011. doi: 10.1038/nm.2425
Integrating Factor Analysis and a Transgenic Mouse Model to Reveal a Peripheral Blood Predictor of Breast Tumors
Heather G LaBreche, Joseph R Nevins and Erich Huang. BMC Medical Genomics 2011, 4:61 doi:10.1186 1755-8794-4-61
Evidence for the Complexity of MicroRNA-Mediated Regulation in Ovarian Cancer: A Systems Approach
Shahab SW, Matyunina LV, Mezencev R, Walker LD, Bowen NJ, et al. PLoS ONE, 2011, 6(7): e22508. doi:10.1371/journal.pone.0022508
Application of microdroplet PCR for large-scale targeted bisulfite sequencing
Heather Kiyomi Komori, Sarah A LaMere, Ali Torkamani, Glen Traver Hart, Steven Kotsopoulos, Jason Warner, Michael L Samuels, Jeff Olson, Steven R Head, Phillip Ordoukhanian, Pauline L Lee, Darren R Link and Daniel R Salomon; Published in Advance July 14, 2011, doi: 10.1101/gr.116863.110 Genome Res. 2011.
RNA-Seq of Human Neurons Derived from iPS Cells Reveals Candidate Long Non-Coding RNAs Involved in Neurogenesis and Neuropsychiatric Disorders
Mingyan Lin, Erika Pedrosa, Abhishek Shah, Anastasia Hrabovsky, Shahina Maqbool, Deyou Zheng, and Herbert M. Lachman
Development and Independent Validation of a Prognostic Assay for Stage II Colon Cancer Using Formalin-Fixed Paraffin-Embedded Tissue
Richard D. Kennedy, Max Bylesjo, Peter Kerr, Timothy Davison, Julie M. Black, Elaine W. Kay, J Clin, et al Onc November 7, 2011 JCO.2011.35.4498 Published online before print November 7, 2011, doi 10.1200 JCO.2011.35.4498
Systems biology of vaccination for seasonal influenza in humans
Helder I Nakaya, Jens Wrammert, Eva K Lee, Luigi Racioppi, Stephanie Marie-Kunze, W Nicholas Haining, Anthony R Means, Sudhir P Kasturi, Nooruddin Khan, Gui-Mei Li, Megan McCausland, Vibhu Kanchan, Kenneth E Kokko, Shuzhao Li, Rivka Elbein, Aneesh K Mehta, Alan Aderem, Kanta Subbarao, Rafi Ahmed & Bali Pulendran. Nature Immunology, 2011, 12, 786-795, doi:10.1038/ni.2067
Identification of abrogated pathways in fallopian tube epithelium from BRCA1 mutation carriers
Sophia HL George, James Greenaway, Anca Milea, Victoria Clary, Sanjeev Shaw, Monika Sharma, Carl Virtanen, Patricia A Shaw. The Journal of Pathology. September 2011. 225(1): 106-117; doi: 10.1002/path.2927
Association between c-myc amplification and pathological complete response to neoadjuvant chemotherapy in breast cancer
Yasojima H, Shimomura A, Naoi Y, Kishi K, Baba Y, Shimazu K, Nakayama T, Kim SJ, Tamaki Y, Noguchi S. Eur J Cancer. 2011 Aug;47(12):1779-88. Epub 2011 Jul 7.
Whole transcriptome RNAseq analysis from minute amount of total RNA
Muhammad A. Tariq, Hyunsung J. Kim, Olufisayo Jejelowo and Nader Pourmand, Nucl. Acids Res. (2011) doi: 10.1093. First published online: July 6, 2011
Direct generation of functional dopaminergic neurons from mouse and human fibroblasts
Massimiliano Caiazzo, Maria Teresa Dell'Anno, Elena Dvoretskova, Dejan Lazarevic, Stefano Taverna, Damiana Leo, Tatyana D. Sotnikova, Andrea Menegon, Paola Roncaglia, Giorgia Colciago, Giovanni Russo, Piero Carninci, Gianni Pezzoli, Raul R. Gainetdinov, Stefano Gustincich, Alexander Dityatev & Vania Broccoli. Nature. August 2011, 476: 224-227, doi:10.1038/nature10284
Microarray analyses of laser-captured hippocampus reveal distinct gray and white matter signatures associated with incipient Alzheimer's disease
Blalock EM, Buechel HM, Popovic J, Geddes JW, Landfield PW. J Chem Neuroanat. 2011 Oct;42(2):118-26. Epub 2011 Jul 2.
Aortic Valve Cyclic Stretch Causes Increased Remodeling Activity and Enhanced Serotonin Receptor Responsiveness
Balachandran K, Bakay MA, Connolly JM, Zhang X, Yoganathan AP, Levy RJ. Ann Thorac Surg. 2011 Jul;92(1):147-53
Molecular discrimination of cutaneous squamous cell carcinoma from actinic keratosis and normal skin
Seong Hui Ra, Xinmin Li and Scott Binder. Modern Pathology 24, 963-973; July 2011; doi:10.1038/modpathol.2011.39
Regulation of behavioral plasticity by systemic temperature signaling in Caenorhabditis elegans
Takuma Sugi, Yukuo Nishida & Ikue Mori. Nature Neuroscience, 2011, 14:984-992; doi:10.1038/nn.2854
RB and p53 Cooperate to Prevent Liver Tumorigenesis in Response to Tissue Damage
McClendon AK, Dean JL, Ertel A, Fu Z, Rivadeneira DB, Reed CA, Bourgo RJ, Gastroenterology. 2011 Oct;141(4):1439-50. Epub 2011 Jun 24.
Challenges of microarray application for microbial detection and gene expression profiling in food
Liu, Yanhong. Journal of Microbial and Biochemical Technology. June 18, 2011.
Neither IL-17A mRNA nor IL-17A protein are detectable in Langerhans cell histiocytosis lesions
Peters TL, McClain KL, Allen CE. Molecular Therapy. 2011 Aug;19(8):1433-9. doi: 10.1038/mt.2011.106. Epub 2011 Jun 7; PMID: 21654633, PMCID: PMC3149162
The sphingosine 1-phosphate receptor S1P2 maintains the homeostasis of germinal center B cells and promotes niche confinement
Jesse A Green, Kazuhiro Suzuki, Bryan Cho, L David Willison, Daniel Palmer, Christopher D C Allen, Timothy H Schmidt, Ying Xu, Richard L Proia, Shaun R Coughlin & Jason G Cyster. Nature Immunology, 2011, 12: 672-680, doi:10.1038/ni.2047
Role of CXCL13-CXCR5 crosstalk between malignant neuroblastoma cells and Schwannian stromal cells in neuroblastic tumors
Federica Del Grosso, Simona Coco, Paola Scaruffi, Sara Stigliani, Francesca Valdora, Roberto Benelli, Sandra Salvi, Simona Boccardo, Mauro Truini, Michela Croce, Silvano Ferrini, Luca Longo and Gian Paolo Tonini. Molecular Cancer Research, July 2011 9: 815. doi: 10.1158/1541-7786.MCR-10-0367
WT1 regulates epicardial epithelial to mesenchymal transition through B-catenin and retinoic acid signaling pathways.
von Gise A, Zhou B, Honor LB, Ma Q, Petryk A, Pu WT; Dev Biol. 2011 Aug 15;356(2):421-31. Epub 2011 May 30
Maternal Epigenetic Pathways Control Parental Contributions to Arabidopsis Early Embryogenesis
Daphne Autran, Cilia Baroux, Michael T. Raissig, Thomas Lenormand, Michael Wittig
Single Transcription Factor Reprogramming of Hair Follicle Dermal Papilla Cells to Induced Pluripotent Stem Cells
Tsai, S.-Y., Bouwman, B. A., Ang, Y.-S., Kim, S. J., Lee, D.-F., Lemischka, I. R. and Rendl, M. Stem Cells, 2011, 29: 964-971. doi: 10.1002/stem.649
Tissue inflammation modulates gene expression of lymphatic endothelial cells and dendritic cell migration in a stimulus-dependent manner
Benjamin Vigl, David Aebischer, Maximilian Nitschk, Maria Iolyeva, Tamara Rthlin, Olga Antsiferova, and Cornelia Halin, Published online before print May 19, 2011, doi: 10.1182-blood-2010-12-326447 Blood July 7, 2011 vol. 118 no. 1 205-215
Clonal B cells in patients with hepatitis C virus-associated mixed cryoglobulinemia contain an expanded anergic CD21low B-cell subset
Charles ED, Brunetti C, Marukian S, Ritola KD, Talal AH, Marks K, Jacobson IM, Rice CM, Dustin LB. Blood. 2011 May 19;117(20):5425-37.
A novel tumour-suppressor function for the Notch pathway in myeloid leukaemia
Apostolos Klinakis, Camille Lobry, Omar Abdel-Wahab, Philmo Oh, Hiroshi Haeno, Silvia Buonamici, Inge van De Walle, Severine Cathelin, Thomas Trimarchi, Elisa Araldi, Cynthia Liu, Sherif Ibrahim, Miroslav Beran, Jiri Zavadil, Argiris Efstratiadis, Tom Taghon, Franziska Michor, Ross L. Levine & Iannis Aifantis. Nature 2011, 473, 230-233; doi:10.1038/nature09999
Diabetes Adversely Affects Macrophages During Atherosclerotic Plaque Regression in Mice
Parathath S, Grauer L, Huang LS, Sanson M, Distel E, Goldberg IJ, Fisher EA. Diabetes. 2011 Jun; 60(6):1759-69. Epub 2011 May 11. PMID: 21562077, PMCID: PMC3114401
KIF7 mutations cause fetal hydrolethalus and acrocallosal syndromes
Putoux A, Thomas S, Coene KL, Davis EE, Alanay Y, Ogur G, Uz E, Buzas D, Gomes C, Patrier S, Bennett CL, Elkhartoufi N, Frison MH,Rigonnot L, Joye N, Pruvost S, Utine GE, Boduroglu K, Nitschke P, Fertitta L, Thauvin-Robinet C, Munnich A, Cormier-Daire V, Hennekam R,Colin E, Akarsu NA, Bole-Feysot C, Cagnard N, Schmitt A, Goudin N, Lyonnet S, Encha-Razavi F, Siffroi JP, Winey M, Katsanis N, Gonzales M,Vekemans M, Beales PL, Attie-Bitach T. Nature Genetics. 2011 Jun; 43(6):601-6. Epub 2011 May 8. PMID: 21552264
Scriptaid Corrects Gene Expression of a Few Aberrantly Reprogrammed Transcripts in Nuclear Transfer Pig Blastocyst Stage Embryos
Kristin M. Whitworth, Jiangou Zhao, Lee D. Spate, Rongfeng Li, and Randall S. Prather. Cellular Reprogramming. June 2011, 13(3): 191-204. doi:10.1089/cell.2010.0087. Published Online: May 6, 2011
A comparison of the Giardia lamblia trophozoite and cyst transcriptome using microarrays
Zahra Faghiri and Giovanni Widmer BMC Microbiology 2011, 11:91 doi:10.1186-1471-2180-11-91
Gene expression profiles predict survival of patients with advanced non-small cell lung cancers
Harun, R., Hadi, J., Mhazir, N.S., Chyang, P.J., Rose, I., Manap, R.A., Anshar, F.M., Tajuddin, N.A., Li, A.B., Jamal, A.R.A. Modeling, Simulation and Applied Optimization, April 2011. doi: 10.1109/ICMSAO.2011.5775581
Ketones and lactate increase cancer cell ""stemness"", driving recurrence, metastasis and poor clinical outcome in breast cancer
Ubaldo E Martinez-Outschoorn, Marco Prisco, Adam Ertel, Aristotelis Tsirigos, Zhao Lin, Stephanos Pavlides, Chengwang Wang, Neal Flomenberg, Erik S Knudsen, Anthony Howell, Richard G Pestell, Federica Sotgia, and Michael P Lisanti. Cell Cycle 2011 April 15; 10(8): 1271-1286. doi: 10.4161/cc.10.8.15330. Published online 2011 April 15. PMCID: PMC3117136
Global Transcriptomic Profiling Using Small Volumes of Whole Blood: A Cost-Effective Method for Translational Genomic Biomarker Identification in Small Animals
Fricano M.M., Ditewig A.C., Jung P.M., Liguori M.J., Blomme E.A.G., Yang Y.
Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence
Hirokazu Takahashi, Hiroaki Saika, Hideo Matsumura, Yoshiaki Nagamura, Nobuhiro Tsutsumi, Naoko K. Nishizawa and Mikio Nakazono. Ann Bot (2011) 108 (2): 253-261. doi: 10.1093/aob/mcr137
Non-Invasive Genomic Detection of Melanoma
Wachsman W, Chang S, British Journal of Dermatology Volume 164, Issue 4, pages 797-806, April 2011
Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma
Howell G, John S, J Clin Invest. 2011 April 1; 121(4): 1429-1444
TNF Is Necessary for Castration-Induced Prostate Regression, Whereas TRAIL and FasL Are Dispensable
Davis J, Krolewski J, Mol Endocrinol. 2011 Apr;25(4):611-20. Epub 2011 Feb 3.
microRNAs regulate the timing of embryo maturation in Arabidopsis
Willmann M, Jenik P, Plant Physiol. 2011 Apr;155(4):1871-84. Epub 2011 Feb 17.
Altered differentiation and paracrine stimulation of mammary epithelial cell proliferation by conditionally activated Smoothened
Visbal A, Lewis M, Dev Biol. 2011 Apr 1;352(1):116-27. Epub 2011 Jan 27.
Differential regulation of gene expression by protein kinase C isozymes as determined by genome-wide expression analysis
Caino M, Kazanietz M, J Biol Chem. 2011 Apr 1;286(13):11254-64. Epub 2011 Jan 20.
Changes in transcriptional output of human peripheral blood mononuclear cells following resistance exercise
Carlson LA, Tighe SW, Kenefick RW, Dragon J, Westcott NW, Leclair RJ. European Journal of Applied Physiology. 2011 Dec;111(12):2919-29. Epub 2011 Mar 25.
GABA-and acetylcholine-related gene expression in blood correlate with tic severity and microarray evidence for alternative splicing in Tourette syndrome: A pilot
Tian Y, Sharp F, Brain Res. 2011 Mar 24;1381:228-36. Epub 2011 Jan 15.
Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression
Wartman L, Ley T, J Clin Invest. 2011 Mar 23. pii: 45284. doi: 10.1172/JCI45284. [Epub ahead of print]
Transcriptomic Biomarkers for the Accurate Diagnosis of Myocarditis
Heidecker B, Hare J, Circulation. 2011 Mar 22;123(11):1174-84. Epub 2011 Mar 7
Global Array-Based Transcriptomics from Minimal Input RNA Utilising an Optimal RNA Isolation Process Combined with SPIA cDNA Probes
Kennedy L, Miele G, PLoS One. 2011 Mar 22;6(3):e17625.
Transcriptome-Wide Studies of Merkel Cell Carcinoma and Validation of Intratumoral CD8+ Lymphocyte Invasion As an Independent Predictor of Survival
Paulson K, Nghiem P, J Clin Oncol. 2011 Mar 21. [Epub ahead of print]
Clonal B cells in patients with hepatitis C virus-associated mixed cryoglobulinemia contain an expanded anergic CD21low B cell subset
Marks K, Dustin L, Blood. 2011 Mar 18. [Epub ahead of print]
A Unique Hybrid Renal Mononuclear Phagocyte Activation Phenotype in Murine Systemic Lupus Erythematosus Nephritis
Bethunaickan R, Davidson A, J Immunol. 2011 Apr 15;186(8):4994-5003. Epub 2011 Mar 16.
Exon-array profiling unlocks clinically and biologically relevant gene signatures from formalin-fixed paraffin-embedded tumour samples
J S Hall, H S Leong, British Journal of Cancer. 15 March 2011: 104, 971-981
Highly Activated Cytotoxic CD8 T Cells Express Protective IL-10 at the Peak of Coronavirus-Induced Encephalitis
Trandem K, Perlman S, J Immunol. 2011 Mar 15;186(6):3642-52. Epub 2011 Feb 11.
Shmt1 Heterozygosity Impairs Folate-Dependent Thymidylate Synthesis Capacity and Modifies Risk of Apcmin-Mediated Intestinal Cancer Risk
MacFarlane A, Stover P, Cancer Res. 2011 Mar 15;71(6):2098-107.
Changes in Whole Blood Gene Expression in Obese Subjects with Type 2 Diabetes Following Bariatric Surgery: a Pilot Study
Berisha S, Smith J, PloS One. 2011 Mar 10;6 (3): e16729.
Inositol 1, 4, 5-trisphosphate receptors are essential for the development of the second heart field
Nakazawa M, Yamagishi H, J Mol Cell Cardiol. 2011 Mar 5. [Epub ahead of print]
Targeting SOX17 in Human Embryonic Stem Cells Creates Unique Strategies for Isolating and Analyzing Developing Endoderm
Wang P, Kim S, Cell Stem Cell. 2011 Mar 4;8(3):335-46.
Transient receptor potential ion channel Trpm7 regulates exocrine pancreatic epithelial proliferation by Mg2+-sensitive Socs3a signaling in development and
Yee N, Liang I, Dis Model Mech. 2011 Mar;4(2):240-54. Epub 2010 Dec 23
Genetic mosaic analysis reveals a major role for frizzled 4 and frizzled 8 in controlling ureteric growth in the developing kidney
Ye X, Nathans J, Development. 2011 Mar;138(6):1161-72.
NKp46 identifies an NKT cell subset susceptible to leukemic transformation in mouse and human
Yu J, Caliguiri M, J Clin Invest. 2011 Mar 1. pii: 43242. doi: 10.1172/JCI43242. [Epub ahead of print]
Research Resource: Comparative Nuclear Receptor Atlas: Basal and Activated Peritoneal B-1 and B-2 Cells
Diehl C, Witztum J, Mol Endocrinol. 2011 Mar;25(3):529-45. Epub 2011 Jan 27.
The female-specific Doublesex isoform regulates pleiotropic transcription factors to pattern genital development in Drosophila
Chatterjee S, Siegal M, Development. 2011 Mar;138(6):1099-109.
The function of FGF signaling in the lens placode
Garcia C, Beebe D, Dev Biol. 2011 Mar 1;351(1):176-85. Epub 2011 Jan 9.
Modelling asthma in macaques: longitudinal changes in cellular and molecular markers
Ayanoglu G, Wardle R, Eur Respir J. 2011 Mar;37(3):541-52. Epub 2010 Jul 22.
Differential gene expression profiles of neurothekeomas and nerve sheath myxomas by microarray analysis
Sheth S, Dry S, Mod Pathol. 2011 Mar;24(3):343-54. Epub 2011 Feb 4.
Rara haploinsufficiency modestly influences the phenotype of acute promyelocytic leukemia in mice
Welch J, Ley T, Blood. 2011 Feb 24;117(8):2460-8. Epub 2010 Dec 29.
Regulation of the DNA Damage Response and Gene Expression by the Dot1L Histone Methyltransferase and the 53Bp1 Tumour Suppressor
Fitzgerald J, Lowndes N, PLoS One. 2011 Feb 24;6(2):e14714.
Integrative analysis of next generation sequencing for small non-coding RNAs and transcriptional regulation in Myelodysplastic Syndromes
Beck D, Zhou X, BMC Med Genomics. 2011 Feb 23;4:19.
Programming the magnitude and persistence of antibody responses with innate immunity
Sudhir Pai Kasturi, Ioanna Skountzou, Randy A. Albrecht, Dimitrios Koutsonanos, Tang Hua, Helder I. Nakaya, Rajesh Ravindran, Shelley Stewart, Munir Alam, Marcin Kwissa, Francois Villinger, Niren Murthy, John Steel, Joshy Jacob, Robert J. Hogan, Adolfo Garcia-Sastre, Richard Compans & Bali Pulendran. Nature. February 2011; 470, 543-547.doi:10.1038/nature09737
A PATHOBIOLOGICAL ROLE OF THE INSULIN RECEPTOR IN CHRONIC LYMPHOCYTIC LEUKEMIA
Saiya-Cork K, Malek S, Clin Cancer Res. 2011 Feb 17. [Epub ahead of print]
GABP controls a critical transcription regulatory module that is essential for maintenance and differentiation of hematopoietic stem/progenitor cells
Yu S, Xue H, Blood. 2011 Feb 17;117(7):2166-78. Epub 2010 Dec 7.
Measurable impact of RNA quality on gene expression results from quantitative PCR
Vermeulen J, Vandesompele J, Nucleic Acids Res. 2011 Feb 11. [Epub ahead of print]
Fusion between Intestinal Epithelial Cells and Macrophages in a Cancer Context Results in Nuclear Reprogramming
Powell A, Wong M, Cancer Res. 2011 Feb 15;71(4):1497-505. Epub 2011 Feb 8.
High genomic grade index associated with poor prognosis for lymph node_negative and estrogen receptor_positive breast cancers and with good response to
Naoi Y, Noguchi S, Cancer. 2011 Feb 1;117(3):472-9. doi: 10.1002/cncr.25626. Epub 2010 Sep 27.
Regulation of imprinted gene expression in Arabidopsis endosperm
Hsieh T, Fischer R, Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):1755-62. Epub 2011 Jan 21.
A spatial and temporal map of C. elegans gene expression
Spencer W, Miller D, Genome Res. 2011 Feb;21(2):325-41. Epub 2010 Dec 22.
In Vivo Profiling of Hypoxic Gene Expression in Gliomas Using the Hypoxia Marker EF5 and Laser-capture Microdissection
Marotta D, Koumenis C, Cancer Res. 2011 Feb 1;71(3):779-89. Epub 2011 Jan 25.
Loss of Pten Causes Tumor Initiation Following Differentiation of Murine Pluripotent Stem Cells Due to Failed Repression of Nanog
Lindgren A, Clark A, PLoS One. 2011 Jan 27;6(1):e16478.
Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis
Novershtern N, Regev A, Cell. 2011 Jan 21;144(2):296-309.
Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis
Mahoney S, Gifford D, Genome Biol. 2011 Jan 13;12(1):R2. [Epub ahead of print]
Colony-stimulating Factor 2 Inhibits Induction of Apoptosis in the Bovine Preimplantation Embryo
Barbara Loureiro, Lilian J. Oliveira, Mauricio G. Favoreto, Peter J. Hansen. American Journal of Reproductive Immunology 2011; 65(6): 578-588. doi: 10.1111/j.1600-0897.2010.00953.x. Article first published online: 12 January 2011.
Neurogenin3 inhibits proliferation in endocrine progenitors by inducing Cdkn1a
Miyatsuka T, German M, Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):185-90. Epub 2010 Dec 20.
Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans
Hallem E, Ringstad N, Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):254-9. Epub 2010 Dec 20.
Optimization of whole-transcriptome amplification from low cell density deep-sea microbial samples for metatranscriptomic analysis
Wu J, Gao W, Zhang W, Meldrum DR, J Microbiol Methods. 2011 Jan;84(1):88-93. Epub 2010 Oct 31.
Acquiring genome wide gene expression profiles in Guthrie card blood spots using microarrays
Khoo S, Resau J, Pathology International, Volume 61, Issue 1, pages 1-6, January 2011
Altered mRNA expression after long_term soleus electrical stimulation training in humans with paralysis
Adams C, Shields R, Muscle & Nerve, Volume 43, Issue 1, pages 65-75, January 2011
The rhizosphere-competent entomopathogen Metarhizium anisopliae expresses a specific subset of genes in plant root exudate
Pava-Ripoll M, Leger R, Microbiology. 2011 Jan;157(Pt 1):47-55. Epub 2010 Oct 14.
FOXL2 and BMP2 Act Cooperatively to Regulate Follistatin Gene Expression during Ovarian Development
Kashimada K, Koopman P, Endocrinology 2011 Jan;152(1):272-80. Epub 2010 Nov 17
Laser-Capture Microdissection of Renal Tubule Cells and Linear Amplification of RNA for Microarray Profiling and Real-Time PCR
Susie-Jane Noppert, Susanne Eder and Michael Rudnicki. Methods in Molecular Biology, 2011, Volume 755, 257-266, DOI: 10.1007/978-1-61779-163-5_21. PMID: 21761310