Publications
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Ovation FFPE WTA
Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells
Micah J. Benson, Tarmo Aijo, Xing Chang, John Gagnon, Utz J. Pape, Vivek Anantharaman, L. Aravind, Juha-Pekka Pursiheimo, Shalini Oberdoerffer, X. Shirley Liu, Riitta Lahesmaa, Harri Lahdesmaki and Anjana Rao; Published online before print September 18, 2012, doi: 10.1073/pnas.1214414109 PNAS September 18, 2012
Global Identification of New Substrates for the Yeast Endoribonuclease, RNase Mitochondrial RNA Processing (MRP)
Jason Aulds, Sara Wierzbicki, Adrian McNairn and Mark E. Schmitt; Journal of Biological Chemistry September 12, 2012, doi: 10.1074 jbc.M112.389023
A metabolic prosurvival role for PML in breast cancer
Arkaitz Carracedo, Dror Weiss, Amy K. Leliaert, Manoj Bhasin, Vincent C.J. de Boer, Gaelle Laurent, Andrew C. Adams, Maria Sundvall, Su Jung Song, Keisuke Ito, Lydia S. Finley, Ainara Egia, Towia Libermann, Zachary Gerhart-Hines, Pere Puigserver, Marcia C. Haigis, Elefteria Maratos-Flier, Andrea L. Richardson, Zachary T. Schafer, and Pier P. Pandolfi; J Clin Invest. 2012;122(9):3088-3100. doi:10.1172/JCI62129
Single-stranded microRNA mimics
Guillaume Chorn, Molly Klein-McDowell, Lihong Zhao, Matthew A. Saunders, W. Michael Flanagan, Aarron T. Willingham and Lee P. Lim;Published in Advance August 21, 2012, doi: 10.1261/rna.031278.111 RNA 2012. 18: 1796-1804
Characterization of Circulating Endothelial Cells in Acute Myocardial Infarction
S. Damani, A. Bacconi, O. Libiger, A. H. Chourasia, R. Serry, R. Gollapudi, R. Goldberg, K. Rapeport, S. Haaser, S. Topol, S. Knowlton, K. Bethel, P. Kuhn, M. Wood, B. Carragher, N. J. Schork, J. Jiang, C. Rao, M. Connelly, V. M. Fowler, E. J. Topol; Sci. Transl. Med. 4, 126ra33 (2012)
Osteogenic effects of a potent Src-over-Abl-selective kinase inhibitor in the mouse
Murrills RJ, Fukayama S, Boschelli F, Matteo JJ, Owens J, Golas JM, Patel D, Lane G, Liu YB, Carter L, Jussif J, Spaulding V, Wang YD,Boschelli DH, McKew JC, Li XJ, Lockhead S, Milligan C, Kharode YP, Diesl V, Bai Y, Follettie M, Bex FJ, Komm B, Bodine PV. Journal of Pharmacology Experimental Therapeutics. 2012 Mar; 340(3):676-87. Epub 2011 Dec 9. PMID: 22171089
Epigenetic Mechanisms of Groucho/Grg/TLE Mediated Transcriptional Repression
Sanjeevkumar R. Patel, Samina S. Bhumbra, Raghavendra S. Paknikar, Gregory R. Dressler. Molecular Cell, 2011, 45(2): 185-195, doi: 10.1016/j.molcel.2011.11.007
Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation
Shannon E. Mullican, Christine A. Gaddis, Theresa Alenghat, Meera G. Nair, Paul R. Giacomin, Logan J. Everett, Dan Feng, David J. Steger, Jonathan Schug, David Artis and Mitchell A. Lazar. Genes & Development, 2011, 25:2480-2488; doi:10.1101/gad.175950.111
Transient ischemic attacks characterized by RNA profiles in blood
Zhan X, Jickling GC, Tian Y, Stamova B, Xu H, Ander BP, Turner RJ, Mesias M, Verro P, Bushnell C, Johnston SC, Sharp FR. Neurology. 2011 Nov 8; 77(19):1718-24. Epub 2011 Oct 12. PMID: 21998319
Transcriptional responses to loss or gain of function of the leucine-rich repeat kinase 2 (LRRK2) gene uncover biological processes modulated by LRRK2 activity
Elena V. Nikonova, Yulan Xiong, , Keith Q. Tanis, Valina L. Dawson, Robert L. Vogel, Eva M. Finney, David J. Stone, Ian J. Reynolds, Jonathan T. Kern and Ted M. Dawson. Human Molecular Genetics, 2011. doi: 10.1093/hmg/ddr451. First published online: October 4, 2011
Potential candidate genomic biomarkers of drug induced vascular injury in the rat
Deidre A. Dalmas, Marshall S. Scicchitano, David Mullins, Angela Hughes-Earle, Kay Tatsuoka, Michal Magid-Slav, Kendall S. Frazier, Heath C. Thomas. Toxicology and Applied Pharmacology, Dec 2011, 257(2): 284-300, http://dx.doi.org/10.1016/j.taap.2011.09.015
Gene Signatures Derived from a c-MET-Driven Liver Cancer Mouse Model Predict Survival of Patients with Hepatocellular Carcinoma
Ivanovska I, Zhang C, Liu AM, Wong KF, Lee NP, et al. (2011) Gene Signatures Derived from a c-MET-Driven Liver Cancer Mouse Model Predict Survival of Patients with Hepatocellular Carcinoma. PLoS ONE 6(9): e24582. doi:10.1371/journal.pone.0024582. Published September 16, 2011.
Crx broadly modulates the pineal transcriptome
Louise Rovsing, Samuel Clokie, Diego M. Bustos, Kristian Rohde, Steven L. Coon, Thomas Litman, Martin F. Rath, Morten Moller, David C. Klein Journal of Neurochemistry Volume 119, Issue 2, pages 262-274, October 2011. Article first published online: Sept 2, 2011
Regulation of Gene Expression in Ovarian Cancer Cells by Luteinizing Hormone Receptor Expression and Activation
Juan Cui, Brooke M Miner, Joanna B Eldredge, Susanne W Warrenfeltz, Phuongan Dam, Ying Xu. Cui et al. BMC Cancer 2011, 11:280
Profiles of lacunar and nonlacunar stroke
Jickling GC, Stamova B, Ander BP, Zhan X, Tian Y, Liu D, Xu H, Johnston SC, Verro P, Sharp FR. Annals of Neurology. 2011 Sep; 70(3):477-85. doi: 10.1002/ana.22497. Epub 2011 Jul 27. PMID: 21796664, PMCID: PMC3201749
Identification of abrogated pathways in fallopian tube epithelium from BRCA1 mutation carriers
Sophia HL George, James Greenaway, Anca Milea, Victoria Clary, Sanjeev Shaw, Monika Sharma, Carl Virtanen, Patricia A Shaw. The Journal of Pathology. September 2011. 225(1): 106-117; doi: 10.1002/path.2927
TNF Is Necessary for Castration-Induced Prostate Regression, Whereas TRAIL and FasL Are Dispensable
Davis J, Krolewski J, Mol Endocrinol. 2011 Apr;25(4):611-20. Epub 2011 Feb 3.
microRNAs regulate the timing of embryo maturation in Arabidopsis
Willmann M, Jenik P, Plant Physiol. 2011 Apr;155(4):1871-84. Epub 2011 Feb 17.
Transcriptome-Wide Studies of Merkel Cell Carcinoma and Validation of Intratumoral CD8+ Lymphocyte Invasion As an Independent Predictor of Survival
Paulson K, Nghiem P, J Clin Oncol. 2011 Mar 21. [Epub ahead of print]
Changes in Whole Blood Gene Expression in Obese Subjects with Type 2 Diabetes Following Bariatric Surgery: a Pilot Study
Berisha S, Smith J, PloS One. 2011 Mar 10;6 (3): e16729.
Genetic mosaic analysis reveals a major role for frizzled 4 and frizzled 8 in controlling ureteric growth in the developing kidney
Ye X, Nathans J, Development. 2011 Mar;138(6):1161-72.
NKp46 identifies an NKT cell subset susceptible to leukemic transformation in mouse and human
Yu J, Caliguiri M, J Clin Invest. 2011 Mar 1. pii: 43242. doi: 10.1172/JCI43242. [Epub ahead of print]
Rara haploinsufficiency modestly influences the phenotype of acute promyelocytic leukemia in mice
Welch J, Ley T, Blood. 2011 Feb 24;117(8):2460-8. Epub 2010 Dec 29.
Regulation of the DNA Damage Response and Gene Expression by the Dot1L Histone Methyltransferase and the 53Bp1 Tumour Suppressor
Fitzgerald J, Lowndes N, PLoS One. 2011 Feb 24;6(2):e14714.
Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis
Mahoney S, Gifford D, Genome Biol. 2011 Jan 13;12(1):R2. [Epub ahead of print]
Induction of Alzheimer's-like changes in brain of mice expressing mutant APP fed excess methionine
McCampbell A, Wessner K, Marlatt MW, Wolffe C, Toolan D, Podtelezhnikov A, Yeh S, Zhang R, Szczerba P, Tanis KQ, Majercak J, Ray WJ,Savage M. Journal of Neurochemistry. 2011 Jan; 116(1):82-92. doi: 10.1111/j.1471-4159.2010.07087.x. Epub 2010 Dec 2. PMID: 21054384
Differential gene expression between Neuropeptide Y expressing neurons of the dorsomedial nucleus of the hypothalamus and the arcuate nucleus: Microarray
Draper, S, Grove, KL, Brain Research, Volume 1350, 2 September 2010, Pages 139-150
Evaluation of the Complex Transcriptional Topography of Mesenchymal Stem Cell Chondrogenesis for Cartilage Tissue Engineering
Huang AH, Mauck, RL, Tissue Engineering, September 2010, 16(9): 2699-2708
The gut transcriptome of a gall midge, Mayetiola destructor
Zhang, S, Chen, M, Journal of Insect Physiology Volume 56, Issue 9, September 2010, Pages 1198-1206
Basal cells as stem cells of the mouse trachea and human airway epithelium
JR Rock, BL Hogan, PNAS, August 2010
Time Course Gene Expression Using Laser Capture Microscopy-Extracted Bile Ducts, but Not Hepatic Parenchyma, Reveals Acute Alpha-Naphthylisothiocyanate
Cullen JM, Miller RT, Toxicologic Pathology August 2010 38: 715-729
Transcriptome profiling and network analysis of genetically hypertensive mice identifies potential pharmacological targets of hypertension.
Puig, O, Cai, TQ, Physiological Genomics (June 29, 2010)
Peripheral blood gene expression in alopecia areata reveals molecular pathways distinguishing heritability, disease and severity
Coda, AB, Sinha, AA, Genes and Immunity, (10 June 2010)
Providing a stable methodological basis for comparing transcript abundance of developing embryos using microarrays
Gilbert, I, Robert, C, Molecular Human Reproduction, May 17, 2010
Reelin Regulates Postnatal Neurogenesis and Enhances Spine Hypertrophy and Long-Term Potentiation
Pujadas, L, Soriano, E, The Journal of Neuroscience March 31, 2010, 30(13):4636-4649
Comparison of Microarray Analysis of Fine Needle Aspirates and Tissue Specimen in Thyroid Nodule Diagnosis
Kundel, A, Fahley, TJ, Diagnostic Molecular Pharmacology March 2010 - Volume 19 - Issue 1
Development and characterization of a human articular cartilage-derived chondrocyte cell line that retains chondrocyte phenotype
Hoffman BE, Majumdar MK, Journal of Cellular Physiology Volume 222, Issue 3, pages 695-702, March 2010
Loss of Retrograde Endocannabinoid Signaling and Reduced Adult Neurogenesis in Diacylglycerol Lipase Knock-out Mice
Gao, Y, Doherty, P, The Journal of Neuroscience, February 10, 2010, 30(6):2017-2024
Evaluation of the QIAsymphony SP Workstation for Magnetic Particle-Based Nucleic Acid Purification From Different Sample Types for Demanding Downstream
Kruhoffer, M, Lenz, C, Journal of the Association of Laboratory Automation Volume 15, Issue 1, Pages 41-51 (February 2010)
Regulation of hematopoietic stem cell differentiation by a single ubiquitin ligase-substrate complex
Linsey Reavie, Iannis Aifantis; Nature Immunology, January 17, 2010
A gene expression signature of RAS pathway dependence predicts response to PI 3 K and RAS pathway inhibitors and expands the population of RAS
Loboda, A, Watters, J, BMC Medical Genomics 2010, 3:26
Differential gene expression profile of retinoblastoma compared to normal retina
Ganguly, A, Shields, CL, Molecular Vision 2010; 16:1292-1303
Examining Smoking-Induced Differential Gene Expression Changes in Buccal Mucosa
Kupfer, DM, Burian, D, FAA Report January 2010
From transcriptome analysis to therapeutic anti-CD40L treatment in the SOD1 model of amyotrophic lateral sclerosis
Lincecum, JM, Perrin, S, Nature Genetics 42, Pages: 392_399 (2010)
Gene Expression Profiling of Blood for the Prediction of Ischemic Stroke
Stamova, B, Sharp, FR, Stroke 2010;41:2171-2177
Genome response to tissue plasminogen activator in experimental ischemic stroke
Jickling, GC, Sharp, FR, BMC Genomics 2010, 11:254
Identification of Methylmercury Tolerance Gene Candidates in Drosophila
Mahapatra, C, Rand, DM, Toxicological Sciences (2010) 116 (1): 225-238
Immature cell populations and an erythropoiesis gene-expression signature in systemic juvenile idiopathic arthritis: implications for pathogenesis
Hinze, C, Grom, AA, Arthritis Research and Therapy 2010, 12:R123
Long-term dynamic loading improves the mechanical properties of chondrogenic mesenchymal stem cell-laden hydrogel
Huang AH, Mauck, RL, European Cells and Materials, Vol. 19 2010 (pages 72-85)
Reactivation of adiponectin expression in obese patients after bariatric surgery
Hindle, AK, Brody, F, Surgical Endoscopy Volume 24, Number 6, 1367-1373
Research article poolMC: Smart pooling of mRNA samples in microarray experiments
Kainkaryam RM, Woolf, PJ, BMC Bioinformatics 2010, 11:299
Slam Haplotypes Modulate the Response to Lipopolysaccharide In Vivo through Control of NKT Cell Number and Function
Aktan I, Boyson JE, Journal of Immunology, 2010, 185, 144 -156
The DM domain protein DMRT1 is a dose-sensitive regulator of fetal germ cell proliferation and pluripotency
Anthony D. Rentz, David Zarkower, PNAS, December 29, 2009
Early pregnancy peripheral blood gene expression and risk of preterm delivery: a nested case control study
Daniel A Enquobahrie, Tanya Sorenson, BMC Pregnancy and Childbirth, December 10, 2009
RNA Pre-amplification enables large-scale RT-qPCR gene-expression studies on limiting sample amounts
Joelle Vermeulen, Stefaan Derveaux, Steve Lefever, Els De Smet, Katleen De Preter, Nurten Yigit, Anne De Paepe, Filip Pattyn, Frank Speleman and Jo Vandesople; BMC Research Notes November 25 2009, 2:235
Altered gene expression in the Werner and Bloom syndromes is associated with sequences having G-quadruplex forming potential
Jay E. Johnson, F. Brad Johnson, Nucleic Acid Research, November 9, 2009
Genomic Profiling of MicroRNAs and Messenger RNAs Reveals Hormonal Regulation in MicroRNA expression in Human Endometrium
Satu Kuokkanen, Jeffrey W. Pollard, Biology of Reproduction, October 28, 2009
Norrin, frizzled-4, and Lrp5 signaling in endothelial cells controls a genetic program for retinal vascularization
Xin Ye, Jeremy Nathan, Cell, October 16, 2009
Dysregulation of gene expression within the peroxisome proliferator activated receptor pathway in morbidly obese patients
A. Katherine Hindle, Fred Brody, Surgical Endoscopy, October 15, 2009
Differential gene expression in chronic inflammatory demyelinating polyneuropathy (CIDP) skin biopsies
Grace Lee, Norman Latov, Journal of the Neurological Sciences, October 7, 2009
High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity
Weiyin Zhou, Richard Einstein, BMC Genetics, October 5, 2009
Whole genome transcript profiling from fingerstick blood samples: a comparison and feasibility study
EH Robinson, SM Kurian, BMC Genomics, October 5, 2009
DNA methyltransferase 1 is essential for and uniquely regulates hematopoietic stem and progenitor cells
Jennifer J. Trowbridge, Stuart H. Orkin, Cell: Stem Cell, October 1, 2009
Brief focal cerebral ischemia that simulates transient ischemic attacks in humans regulates geneexpression in rat peripheral blood
Xinhua Zhan, Frank R. Sharp, Journal of Cerebral Blood Flow & Metabolism, September 9,2009
PML-RAR? initiates leukemia by conferring properties of self-renewal to committed promyelocytic progenitors
S. Wojiski, DG. Gilliland, Leukemia, August 23, 2009
Developmental delays consistent with cochlear hypothyroidism contribute to failure to develop hearing in mice lacking Slc26a4/pendrin expression
Philine Wangemann, Peying Fong, Am J Physiol Renal Physiol, August 13, 2009
Immune complex relay by subcapsular sinus macrophages and noncognate B cells drives antibody affinity maturation
Tri Giang Phan, Jason G. Cyster, Nature Immunology, June 7, 2009
Gene Expression Analysis Of Peripheral Blood Following Resistance Exercise: 2964: Board# 111 May 30 9: 30 AM-11: 00 AM
Lara A. Carlson, Scott W. Tighe, Medicine & Science in Sports & Exercise, May 2009
Hypothesis: Sarcoidosis is a STAT1-mediated disease
James T. Rosenbaum, Stephen R. Planck, Clinical Immunology, May 2009
Genomic strategy for targeting therapy in castration-resistant prostate cancer
Prateek Mendiratta, Phillip G. Febbo, Journal of Clinical Oncology, April 20, 2009
Mesenchymal origin of hepatic stellate cells, submesothelial cells, and perivascular mesenchymal cells during mouse liver development
Giuliano Ramadori, Tumen Mansuroglu, Hepatology, April 6, 2009
Defining behavioral and molecular differences between summer and migratory monarch butterflies
Haisun Zhu, Steven M. Reppert, BMC Biology, March 31, 2009
Differential Gene Expression in Human Conducting Airway Surface Epithelia and Submucosal Glands
Anthony J. Fischer, Paul B. McCray Jr., Am J Respir Mol Biol, February 2009
Gene expression profiling of whole blood: Comparison of target preparation methods for accurate and reproducible microarray analysis.
Kristina Vartanian, Rachel Slottke, Timothy Johnstone, Amanda Casale, Stephen R Planck, Dongseok Choi, Justine R Smith, James T Rosen- baum, Christina A Harrington, BMC Genomics. 2009 Jan 5;10:2.
Cutting edge: TLR-dependent viral recognition along with type I IFN positive feedback signaling masks the requirement of viral replication for IFN-{alpha} production in
Yutaro Kumagai, Shizuo Akira, Journal of Immunology, 2009
Gene and Protein Expression Pilot Profiling and Biomarkers in an Experimental Mouse Model of Hypertensive Glaucoma
Molly M. Walsh, Paulo A. Ferreira, Experimental Biology and Medicine, Volume 234, Number 8, Pp 918-939
LPS-induced transcriptomic changes are detectable in minimal volumes of rat whole blood
Meagan M Grudzien, Yi Yang, The FASEB Journal, 2009
Ott1 (Rbm15) is essential for placental vascular branching morphogenesis and embryonic development of the heart and spleen
Glen D. Raffel, D. Gary Gilliland, Molecular and Cell Biology, January 2009
Prognostic significance and therapeutic potential of eukaryotic translation initiation factor 5A (eIF5A) in hepatocellular carcinoma
Nikki P. Lee, John M. Luk, International Journal of Cancer, 2009
Recognition of Borrelia burgdorferi, the Lyme Disease Spirochete, by TLR7 and TLR9 Induces a Type I IFN Response by Human Immune Cells
MM Petzke, I Schartz, The Journal of Immunology, 2009
Tumor recognition and self-recognition induce distinct transcriptional profiles in antigen-specific CD4 T cells
Derese Getnet, Charles G. Drake, The Journal of Immunology, 2009
Hematopoietic Lineage Transcriptome Stability and Representation in PAXgeneTM Collected Peripheral Blood Utilising SPIA Single-Stranded cDNA Probes for Microarray
Laura Kennedy, J. Keith Vass, D. Ross Haggart, Steve Moore, Michael E. Burczynski, Dan Crowther, Gino Miele; Biomarker Insights, 2008:3403-417.
The Chemokine Receptors CXCR4 and CCR7 are Associated with Tumor Size and Pathologic Indicators of Tumor Aggressiveness in Papillary Thyroid Carcinoma.
Wagner PL, Moo TA, Arora N, Liu YF, Zarnegar R, Scognamiglio T, Fahey TJ; Ann Surg Oncol, 2008 Oct;15(10):2833-41. Epub 2008 Aug 12.
GATA4 is a direct transcriptional activator of Cyclin D2 and Cdk4 and is required for cardiomyocyte proliferation in anterior heart field-derived myocardium
Anabel Rojas, Sek Won Kong, Pooja Agarwal, Brian Gilliss, William T. Pu, and Brian L. Black; Mol Cell Biol. Molecular and Cellular Biology, September 2008, p. 5420-5431, Vol. 28, No. 17. Epub 2008 Jun 30.
Phenotypic Analysis of Prostate-Infiltrating Lymphocytes Reveals TH17 and Treg Skewing
Karen Sandell Sfanos, Tullia C. Bruno, Charles H.Maris, Lauren Xu, Christopher J. Thoburn, Angelo M. DeMarzo, Alan K. Meeker, William B. Isaacs, and Charles G. Drake Clinical Cancer Research, June 2008;14(11):3254-3261
Generation of a non-small cell lung cancer transcriptome microarray
Austin Tanney, Gavin R Oliver, Vadim Farztdinov, Richard D Kennedy, Jude M Mulligan, Ciaran E Fulton, Susan M Farragher, John K Field, Patrick G Johnston, D Paul Harkin, Vitali Proutski and Karl A Mulligan BMC Medical Genomics, May 2008, 1:20 doi:10.1186/1755-8794-1-20
Expression of Stimulated by Retinoic Acid Gene 8 (Stra8) and Maturation of Murine Gonocytes and Spermatogonia Induced by Retinoic Acid In Vitro
Qing Zhou, Ying Li, Rong Nie, Patrick Friel, Debra Mitchell, Ryan M. Evanoff , Derek Pouchnik, Brent Banasik, John R. McCarrey, Christopher Small, and Michael D. Griswold BIOLOGY OF REPRODUCTION 78, 537-545, Issue 3, March 2008, DOI: 10.1095/biolreprod.107.064337
Molecular signatures suggest a major role for stromal cells in development of invasive breast cancer
Theresa Casey, Jeffrey Bond, Scott Tighe, Timothy Hunter, Laura Lintault, Osman Patel, Jonathan Eneman, Abigail Crocker, Jeffrey White, Joseph Tessitore, Mary Stanley, Seth Harlow, Donald Weaver, Hyman Muss and Karen Plaut Breast Cancer Research and Treatment 0167-6806, March 2008, DOI: 10.1007/s10549-008-9982-8
Lrig3 regulates neural crest formation in Xenopus by modulating Fgf and Wnt signaling pathways
Hui Zhao, Kosuke Tanegashima, Hyunju Ro, Igor B. Dawid; Development, 2008 Apr; 135(7):1283-93. Epub 2008 Feb 20.
Integrated Genomic Profiling of Chronic Lymphocytic Leukemia Identifies Subtypes of Deletion 13q14
Peter Ouillette, Harry Erba, Lisa Kujawski, Mark Kaminski, Kerby Shedden and Sami N. Malek Cancer Research 68, 1012-1021, February 2008. DOI: 10.1158/0008-5472.CAN-07-3105
Identification of RPS14 as a 5q- syndrome gene by RNA interference screen
Benjamin L. Ebert, Jennifer Pretz, Jocelyn Bosco, Cindy Y. Chang, Pablo Tamayo, Naomi Galili, Azra Raza, David E. Root, Eyal Attar, Steven R. Ellis & Todd R. Golub; Nature, 451, 335-339, January 17, 2008.
Development of heart valves requires Gata4 expression in endothelial-derived cells
Singh S, Robinson M, Ismail I, Saha M, Auer H, Kornacker K, Robinson ML, Bates CM, McHugh KM; Dev Dyn, 2008 Jan; 237(1):170-86.
Effects of dietary energy restriction on gene regulation in mammary epithelial cells
Zongjian Zhu, Weiqin Jiang, John N. McGinley, Jennifer M. Price, Bifeng Gao, Henry J. Thompson; Cancer Research, 2007 Dec 15; 67(24):12018-25.
The Transcriptome and Metabolic Gene Signature of Protoplasmic Astrocytes in the Adult Murine Cortex
Ditte Lovatt, Ursula Sonnewald, Helle S. Waagepetersen, Arne Schousboe, Wei He, Jane H.-C. Lin, Xiaoning Han, Takahiro Takano, Su Wang, Fraser J. Sim, Steven A. Goldman, and Maiken Nedergaard, The Journal of Neuroscience, November 7, 2007, 27(45):12255-12266; doi:10.1523/JNEUROSCI.3404-07.2007
Comparison of Longitudinal Leukocyte Gene Expression after Burn Injury or Trauma-Hemorrhage in Mice.
James A Lederer, Bernard H. Brownstein, M. Cecilia Lopez, Sandra MacMillan, Adam J Delisle1, Malcolm P MacConmara, Mashkoor A Choudhry, Wenzhong Xiao, Steven Lekousi, J. Perren Cobb8, Henry V. Baker, John A Mannick, and Irshad H. Chaudry; Physiol. Genomics, November 6, 2007.
Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids
Prescott G. Woodruff, Homer A. Boushey, Gregory M. Dolganov, Chris S. Barker, Yee Hwa Yang, Samantha Donnelly, Almut Ellwanger, Sukhvinder S. Sidhu, Trang P. Dao-Pick, Carlos Pantoja, David J. Erle, Keith R. Yamamoto, and John V. Fahy PNAS, October 2007, vol. 104, no. 40, 15858-15863
Loss of Wnt4 and Foxl2 leads to female-to-male sex reversal extending to germ cells
Chris Ottolenghi, Emanuele Pelosi, Joseph Tran, Maria Colombino, Eric Douglass, Timur Nedorezov, Antonio Cao, Antonino Forabosco and David Schlessinger Human Molecular Genetics, August 2007, Vol. 16, No. 23 2795-2804
Characterization of weight loss and weight regain mechanisms after Roux-en-Y gastric bypass in rats
Ana Guijarro, Susumu Suzuki, Chung Chen, Henriette Kirchner, Frank A. Middleton, Sergiy Nadtochiy, Paul S. Brookes, Akira Niijima, Akio Inui, and Michael M. Meguid Am J Physiol Regul Integr Comp Physiol, 293 (4): R1474, July 2007
Ovarian gene expression in the absence of FIGLA, an oocyte-specific transcription factor
Saurabh Joshi, Holly Davies, Lauren Porter Sims, Shawn E Levy and Jurrien Dean. June 2007, BMC Developmental Biology, 7:67 doi:10.1186/1471-213X-7-67
Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells
Geppino Falco, Sung-Lim Lee, Ilaria Stanghellini, Uwem C. Bassey, Toshio Hamatani and Minoru S. H. Ko Published online 2007 May 8. doi: 10.1016/j.ydbio.2007.05.003
IRAK-4 Kinase Activity Is Required for Interleukin-1 (IL-1) Receptor- and Toll-like Receptor 7-mediated Signaling and Gene Expression
Magdalena Koziczak-Holbro, Claire Joyce, Anton Gluck, Bernd Kinzel, Matthias Muller, Claude Tschopp, John C. Mathison, Christopher N. Davis, and Hermann Gram J. Biol. Chem., Vol. 282, Issue 18, 13552-13560, May 2007; doi:10.1074/jbc.M700548200
Molecular Abnormalities in Oocytes from Women with Polycystic Ovary Syndrome Revealed by Microarray Analysis
Jennifer R. Wood, Daniel A. Dumesic, David H. Abbott, and Jerome F. Strauss III The Journal of Clinical Endocrinology & Metabolism, February 2007, 92(2):705-713
Replacing cRNA targets with cDNA reduces microarray cross-hybridization
Aron C Eklund, Leah R Turner, Pengchin Chen, Roderick V Jensen, Gianfranco deFeo, Anne R Kopf-Sill& Zoltan Szallasi. September 2006, Nature Biotechnology 24: 1071 - 1073 doi:10.1038/nbt0906-1071
Transcriptional regulatory network analysis of developing human erythroid progenitors reveals patterns of coregulation and potential transcriptional regulators
M. A. Keller, S. Addya, R. Vadigepalli, B. Banini, K. Delgrosso, H. Huang, and S. Surrey. Physiol Genomics 28: 114-128, August 2006; doi:10.1152/physiolgenomics.00055.2006
A new insight into the cellular regulation of aqueous outflow: how trabecular meshwork endothelial cells drive a mechanism that regulates the permeability of Schlemm's canal endothelial cells Nervous System
J A Alvarado, R G Alvarado, R F Yeh, L Franse-Carman, G R Marcellino and M J Brownstein. November 2005, British Journal of Ophthalmology 2005;89:1500-1505
Foxl2 is required for commitment to ovary differentiation
Chris Ottolenghi, Shakib Omari, J. Elias Garcia-Ortiz, Manuela Uda, Laura Crisponi, Antonino Forabosco, Giuseppe Pilia and David Schlessinger. June 2005, Human Molecular Genetics 14(14):2053-2062
Increase DNA microarray hybridization specificity using sscDNA targets
Christopher S. Barker, Chandi Griffin, Gregory M. Dolganov, Kristina Hanspers, Jean Yee Hwa Yang, and David J. Erle. Apr 2005, BMC Genomics, 6:57
A mouse model for study of systemic HIV-1 infection, antiviral immune responses, and neuroinvasiveness
Mary Jane Potash, Wei Cha, Galina Bentsman, Nicolae Paris, Manisha Saini, Jadwiga Nitkiewicz, Paula Belem, Leroy Sharer, Andrew I. Brooks, and David J. Volsky. Jan 2005, PNAS 102: 3760-3765
Interactions Between Endothelia of the Trabecular Meshwork and of Schlemm's Canal: A New Insight into the Regulation of Aqueous Outflow in the Eye
Jorge A. Alvarado, Ru-Fang Yeh, Linda Franse-Carman, George Marcellino, and Michael J. Brownstein, 2005, Transactions of the American Ophthalmological Society Vol 103, 148-163